RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TDHQ8IZJ6 230 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 FAM3CQ92520 227 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 TRNT1Q96Q11 434 aaKnown RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 YIPF4Q9BSR8 244 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 M0R3H8 397 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 FOXD2O60548 495 aaPredicted RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 LCKP06239 509 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 POLR2CP19387 275 aaPredicted RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 SOX18P35713 384 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 SLC15A1P46059 708 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 ALDH6A1Q02252 535 aaKnown RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 EIF2B5Q13144 721 aaKnown RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 ZNF829Q3KNS6 432 aaPredicted RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 SLX4IPQ5VYV7 408 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 C12orf73Q69YU5 71 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 CCDC81Q6ZN84 652 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 LINC00299Q6ZSB3 139 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 P2RY8Q86VZ1 359 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 HMGB4Q8WW32 186 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 OTUB1Q96FW1 271 aaPredicted RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 ARHGDIGQ99819 225 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 POLMQ9NP87 494 aaPredicted RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 GIN1Q9NXP7 522 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 RABL2BQ9UNT1 228 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 LIPT1Q9Y234 373 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 POU3F3P20264 500 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 C21orf33P30042 268 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 BUD31P41223 144 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 CTSKP43235 329 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 LSSP48449 732 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SNRPGP62308 76 aaKnown RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 LTB4RQ15722 352 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 EXOSC6Q5RKV6 272 aaKnown RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 TMEM201Q5SNT2 666 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SAMD14Q8IZD0 417 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 NLGN4XQ8N0W4 816 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 MORN4Q8NDC4 146 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 OR6T1Q8NGN1 323 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 BAHD1Q8TBE0 780 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 PRRC1Q96M27 445 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 ACTRT3Q9BYD9 372 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 TCEAL2Q9H3H9 227 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 CPNE7Q9UBL6 633 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 DAPP1Q9UN19 280 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 DUSP12Q9UNI6 340 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SLC9A8Q9Y2E8 581 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SLC22A7Q9Y694 548 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 URADA6NGE7 173 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 M0R082 166 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 UGT2B17O75795 530 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 PSMB9P28065 219 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 CNR2P34972 360 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 PIN1Q13526 163 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 LEXMQ3ZCV2 418 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 TMEM236Q5W0B7 351 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 LRRC25Q8N386 305 aaPredicted RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 LINC00471Q8N535 108 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 CAMKVQ8NCB2 501 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 FAM46DQ8NEK8 389 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 ZFYVE21Q9BQ24 234 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 ITPAQ9BY32 194 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SLC25A19Q9HC21 320 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 LYRM4Q9HD34 91 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 IMPAD1Q9NX62 359 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 CNOT2Q9NZN8 540 aaKnown RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 SCN3AQ9NY46 2000 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 KIR2DS5A0A0G2JLQ3 304 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 A0A0G2JNG1 304 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SPTY2D1-AS1A0A0U1RR47 76 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 C2orf74A8MZ97 194 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 KIR2DS3K7RE56 304 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 KIR2DS5Q14953 304 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 THOC7Q6I9Y2 204 aaKnown RBP12.93□□□□□ -0.34
RTN3-210ENST00000540798 USP53Q70EK8 1073 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SLC7A5P1Q8MH63 180 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 OR2L13Q8N349 312 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 OR7G2Q8NG99 324 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 PATE1Q8WXA2 126 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 GSDMCQ9BYG8 508 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 IL21RQ9HBE5 538 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 GPR83Q9NYM4 423 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 CALML5Q9NZT1 146 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 SELENONQ9NZV5 590 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 CHST2Q9Y4C5 530 aa12.93□□□□□ -0.34
RTN3-210ENST00000540798 LOC105369274A0A096LPK9 316 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 LOC102723532A0A0G2JNH3 316 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 DNAJB6O75190 326 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 ZIC2O95409 532 aaPredicted RBP12.92□□□□□ -0.34
RTN3-210ENST00000540798 PIPP12273 146 aaPredicted RBP12.92□□□□□ -0.34
RTN3-210ENST00000540798 NR4A1P22736 598 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 CPN2P22792 545 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 CD97P48960 835 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 UGT2B15P54855 530 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 MANEAQ5SRI9 462 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 PODNL1Q6PEZ8 512 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 FAM111BQ6SJ93 734 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 TRIM48Q8IWZ4 208 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 OR4N4Q8N0Y3 316 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 BORCS5Q969J3 196 aa12.92□□□□□ -0.34
RTN3-210ENST00000540798 ORAI3Q9BRQ5 295 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms