RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 TNNI3P19429 210 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 MT3P25713 68 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 ZSWIM7Q19AV6 140 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 LRIT3Q3SXY7 679 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 FAAP20Q6NZ36 180 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 TSEN54Q7Z6J9 526 aaKnown RBP4.41□□□□□ -1.7
PRKDC-208ENST00000536710 ARFGAP2Q8N6H7 521 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 PINX1Q96BK5 328 aaKnown RBP4.41□□□□□ -1.7
PRKDC-208ENST00000536710 ZNF599Q96NL3 588 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 VGLL1Q99990 258 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 KAT8Q9H7Z6 458 aaKnown RBP4.41□□□□□ -1.7
PRKDC-208ENST00000536710 SLC35D1Q9NTN3 355 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 ATP6V1HQ9UI12 483 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 BLOC1S6Q9UL45 172 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 FOXJ3Q9UPW0 622 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 NOTCH4Q99466 2003 aa4.41□□□□□ -1.7
PRKDC-208ENST00000536710 A0A1B0GTH9 108 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 CHADO15335 359 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 PDE5AO76074 875 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 NDUFA7O95182 113 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 IGHG1P01857 330 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 CCDC159P0C7I6 412 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 TSPY4P0CV99 314 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 TSPY10P0CW01 314 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 LMO2P25791 158 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 KIF5BP33176 963 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 SAA4P35542 130 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 MDH1P40925 334 aaKnown RBP4.4□□□□□ -1.71
PRKDC-208ENST00000536710 HTR5AP47898 357 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 HSD17B7P56937 341 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 NUCB2P80303 420 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 RAPSNQ13702 412 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 TMEM44Q2T9K0 475 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 ANKRD55Q3KP44 614 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 EMBQ6PCB8 327 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 ABRAXAS1Q6UWZ7 409 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 PAQR9Q6ZVX9 377 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 LPCAT2Q7L5N7 544 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 TSGA13Q96PP4 275 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 C19orf43Q9BQ61 176 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 CCDC28BQ9BUN5 200 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 ZNF416Q9BWM5 594 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 TRIM15Q9C019 465 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 PNNQ9H307 717 aaKnown RBP4.4□□□□□ -1.71
PRKDC-208ENST00000536710 RPAP3Q9H6T3 665 aaPredicted RBP4.4□□□□□ -1.71
PRKDC-208ENST00000536710 HEXA-AS1Q9H8Q6 139 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 PANK3Q9H999 370 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 FAM114A2Q9NRY5 505 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 STARD5Q9NSY2 213 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 C1orf123Q9NWV4 160 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 GPR83Q9NYM4 423 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 CGNQ9P2M7 1197 aaKnown RBP4.4□□□□□ -1.71
PRKDC-208ENST00000536710 CTSZQ9UBR2 303 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 SYNJ2O15056 1496 aa4.4□□□□□ -1.71
PRKDC-208ENST00000536710 NPIPA5A0A0B4J1W7 369 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 TTC26A0AVF1 554 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 LRIT2A6NDA9 550 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 RPL37AP8A6NKH3 93 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 NPIPA5E9PKD4 350 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 E9PMD0 336 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 H0YL77 283 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 H3BTX0 84 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 SGK494L7N484 410 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 LANCL1O43813 399 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 SDC3O75056 442 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 NUDT14O95848 222 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 IGSF6O95976 241 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 GOT2P00505 430 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 CALRP27797 417 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 ACAA2P42765 397 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 NAPAP54920 295 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 VCPP55072 806 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 PPIAP62937 165 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 PAX8Q06710 450 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 EXOSC2Q13868 293 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 CNPY1Q3B7I2 92 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 ACER2Q5QJU3 275 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 RIPPLY2Q5TAB7 128 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 REP15Q6BDI9 236 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 DMKNQ6E0U4 476 aaPredicted RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 KRTAP5-3Q6L8H2 238 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 Q7L0L9 218 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 ZNF573Q86YE8 665 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 ABHD12Q8N2K0 398 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 OR4Q3Q8NH05 313 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 TAF15Q92804 592 aaKnown RBP eCLIP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 ZNF689Q96CS4 500 aaPredicted RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 RBM18Q96H35 190 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 RBM24Q9BX46 236 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 ESM1Q9NQ30 184 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 TRPV5Q9NQA5 729 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 GHRLQ9UBU3 117 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 CIDEBQ9UHD4 219 aa4.39□□□□□ -1.71
PRKDC-208ENST00000536710 PURGQ9UJV8 347 aaKnown RBP4.39□□□□□ -1.71
PRKDC-208ENST00000536710 TCF20Q9UGU0 1960 aaKnown RBP4.38□□□□□ -1.71
PRKDC-208ENST00000536710 IGHV3OR16-10A0A075B7F0 116 aa4.38□□□□□ -1.71
PRKDC-208ENST00000536710 IGKV3D-15A0A087WSY6 115 aa4.38□□□□□ -1.71
PRKDC-208ENST00000536710 E9PQ18 207 aa4.38□□□□□ -1.71
PRKDC-208ENST00000536710 MCF2LO15068 1137 aa4.38□□□□□ -1.71
PRKDC-208ENST00000536710 KRT13P13646 458 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms