RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 A8MV72 311 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 TMEM189-UBE2V1I3L0A0 370 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 I3L521 148 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 hCG_2039718K7EN88 272 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 F2RL2O00254 374 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 PTGESO14684 152 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 GPR42O15529 346 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 LDB2O43679 373 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SH3BP5O60239 455 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SCN2BO60939 215 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SLC22A5O76082 557 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 TGM6O95932 706 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 HRGP04196 525 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 THP07101 528 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 STSP08842 583 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SLC2A2P11168 524 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 CTPS1P17812 591 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 LMO2P25791 158 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 FMO4P31512 558 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 RPL9P32969 192 aaKnown RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 PTGER3P43115 390 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 AGFG1P52594 562 aaKnown RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 ATP12AP54707 1039 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 CCL23P55773 120 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 YBEYP58557 167 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 ERVPABLB-1P60509 514 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 PITX1P78337 314 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 HSF2Q03933 536 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 FPGSQ05932 587 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 RGS1Q08116 209 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SCRN3Q0VDG4 424 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 DUSP8Q13202 625 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 GALEQ14376 348 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 HABP2Q14520 560 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 ZNF235Q14590 738 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 UBXN2BQ14CS0 331 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 LARS2Q15031 903 aaKnown RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 TAF1AQ15573 450 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 SMN1Q16637 294 aaKnown RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 TATDN3Q17R31 274 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 ALFQ53S48 1182 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 CLLU1Q5K131 121 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 NXNL2Q5VZ03 156 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 FAM205BPQ63HN1 556 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 DOK6Q6PKX4 331 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 CERS6Q6ZMG9 384 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 Q6ZSR9 355 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 PTCHD4Q6ZW05 846 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 PLEKHM3Q6ZWE6 761 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 C16orf62Q7Z3J2 963 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 GOLGA7Q7Z5G4 137 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 BBS7Q8IWZ6 715 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 TEX26Q8N6G2 289 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 FAM46DQ8NEK8 389 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 OR7G3Q8NG95 312 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 OR10G2Q8NGC3 310 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 GPR151Q8TDV0 419 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 ZNF431Q8TF32 576 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 ACOT12Q8WYK0 555 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SLC25A46Q96AG3 418 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 CIDECQ96AQ7 238 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 TRIM43Q96BQ3 446 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 LINGO1Q96FE5 620 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 TBATAQ96M53 351 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 KCTD7Q96MP8 289 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SERPINB11Q96P15 392 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 ACOX2Q99424 681 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 MYOCQ99972 504 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 CENPOQ9BU64 300 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 GPR87Q9BY21 358 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 ZYG11BQ9C0D3 744 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 MED28Q9H204 178 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SPNS1Q9H2V7 528 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 ISYNA1Q9NPH2 558 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 ITM2CQ9NQX7 267 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 PLSCR3Q9NRY6 295 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 FAM120CQ9NX05 1096 aaKnown RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 SH3BP4Q9P0V3 963 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 COPZ2Q9P299 210 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 UXTQ9UBK9 157 aaPredicted RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 EIF2B4Q9UI10 523 aaKnown RBP6.23□□□□□ -1.41
USP28-202ENST00000535607 ZDHHC8Q9ULC8 765 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 PCDHB7Q9Y5E2 793 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 AUP1Q9Y679 476 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 FKBP7Q9Y680 259 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 STON1Q9Y6Q2 735 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 RNF215Q9Y6U7 377 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 V9GYH0 126 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 TTC3P53804 2025 aa6.23□□□□□ -1.41
USP28-202ENST00000535607 SCN5AQ14524 2016 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 NCF1BA6NI72 391 aaPredicted RBP6.22□□□□□ -1.41
USP28-202ENST00000535607 NCF1CA8MVU1 366 aaPredicted RBP6.22□□□□□ -1.41
USP28-202ENST00000535607 KRBOX1C9JBD0 128 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 E9PAM4 449 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 E9PQ18 207 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 CLIC1O00299 241 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 CDC7O00311 574 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 PPP6CO00743 305 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 IRAK2O43187 625 aa6.22□□□□□ -1.41
USP28-202ENST00000535607 PRKYO43930 277 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms