RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CEP170P1Q96L14 293 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 CASD1Q96PB1 797 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 TGS1Q96RS0 853 aaKnown RBP3.04□□□□□ -1.92
USP48-215ENST00000534705 RUFY1Q96T51 708 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 SPATA16Q9BXB7 569 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 FTHL17Q9BXU8 183 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 NFKBIZQ9BYH8 718 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 CXCL16Q9H2A7 254 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 VCX3BQ9H321 246 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 TLE6Q9H808 572 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 LIN28AQ9H9Z2 209 aaKnown RBP3.04□□□□□ -1.92
USP48-215ENST00000534705 TMBIM4Q9HC24 238 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 POLD4Q9HCU8 107 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 VCX3AQ9NNX9 186 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 GDF3Q9NR23 364 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 AGPAT5Q9NUQ2 364 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 FAIMQ9NVQ4 179 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 RMND1Q9NWS8 449 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 TMEM161AQ9NX61 479 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 RABL2AQ9UBK7 228 aaPredicted RBP3.04□□□□□ -1.92
USP48-215ENST00000534705 TRPC4Q9UBN4 977 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 FBXL5Q9UKA1 691 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 CPSF3Q9UKF6 684 aaKnown RBP3.04□□□□□ -1.92
USP48-215ENST00000534705 APPL1Q9UKG1 709 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 MTUS1Q9ULD2 1270 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 PAIP2BQ9ULR5 123 aaKnown RBP3.04□□□□□ -1.92
USP48-215ENST00000534705 GINS2Q9Y248 185 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 PYGO1Q9Y3Y4 419 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 N6AMT1Q9Y5N5 214 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 PRSS21Q9Y6M0 314 aa3.04□□□□□ -1.92
USP48-215ENST00000534705 NUP205Q92621 2012 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 DOCK4Q8N1I0 1966 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 DMDP11532 3685 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 EDDM13A0A1B0GTR0 161 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 A0A1B0GU03 582 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 LAD1O00515 517 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 ZNF197O14709 1029 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 B4GALT5O43286 388 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 PEX11AO75192 247 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TADA2AO75478 443 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 KHDRBS3O75525 346 aaKnown RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 MTRF1O75570 445 aaKnown RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 TRMUO75648 421 aaKnown RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 ZFAND5O76080 213 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 SNX4O95219 450 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 YEATS4O95619 227 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 APBB3O95704 486 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 GNA14O95837 355 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 NGFP01138 241 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CCDC159P0C7I6 412 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 RHOXF2BP0C7M4 288 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 PTPN3P26045 913 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TMOD1P28289 359 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 PRKCIP41743 596 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 SLC9A3P48764 834 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 KIAA1024LP59773 190 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 ARPC4P59998 168 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 HERV-K104P61576 105 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 HPCAP84074 193 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CKAP4Q07065 602 aaKnown RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 KLC1Q07866 573 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 GPM6BQ13491 265 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 ZNF273Q14593 569 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TRADDQ15628 312 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 NDUFA5Q16718 116 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CNPY1Q3B7I2 92 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CCDC153Q494R4 210 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CFAP157Q5JU67 520 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 FFAR4Q5NUL3 377 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 DCAF10Q5QP82 559 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 THOC7Q6I9Y2 204 aaKnown RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 TMEM53Q6P2H8 277 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TEX38Q6PEX7 206 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 DHRS4L2Q6PKH6 230 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 PPP1R21Q6ZMI0 780 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 ZNF497Q6ZNH5 498 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TMPRSS11FQ6ZWK6 438 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 ADGRD2Q7Z7M1 963 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 PIGZQ86VD9 579 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TMEM173Q86WV6 379 aaPredicted RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 NUDT13Q86X67 352 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 COMMD2Q86X83 199 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 TIGD4Q8IY51 512 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 DNAJC22Q8N4W6 341 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 COLGALT1Q8NBJ5 622 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 RNF149Q8NC42 400 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 MAPK1IP1LQ8NDC0 245 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 OR13J1Q8NGT2 312 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 OLIG1Q8TAK6 271 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 DQX1Q8TE96 717 aaKnown RBP3.03□□□□□ -1.92
USP48-215ENST00000534705 HPSE2Q8WWQ2 592 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 SLC13A3Q8WWT9 602 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CPB2Q96IY4 423 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CATSPER2Q96P56 530 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 ZIM3Q96PE6 472 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 FAM111AQ96PZ2 611 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 USP28Q96RU2 1077 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 KCNK16Q96T55 309 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 CDRT15Q96T59 188 aa3.03□□□□□ -1.92
USP48-215ENST00000534705 RHOXF2Q9BQY4 288 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms