RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 M0R296 226 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 PLOD3O60568 738 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 SLITRK5O94991 958 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 CYP4B1P13584 511 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 EPHA2P29317 976 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 HLCSP50747 726 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 TPD52P55327 224 aaPredicted RBP19.38■□□□□ 0.69
VPS28-209ENST00000528142 OR1D5P58170 312 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 FAM53BQ14153 422 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 MEP1AQ16819 746 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 PRICKLE4Q2TBC4 344 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 FAM214AQ32MH5 1076 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 RBM48Q5RL73 367 aaKnown RBP19.38■□□□□ 0.69
VPS28-209ENST00000528142 C6orf141Q5SZD1 244 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 LYSMD4Q5XG99 296 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 SLC35F3Q8IY50 421 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 TMEM105Q8N8V8 129 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 ZNF675Q8TD23 568 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 DHRS1Q96LJ7 313 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 PDE7BQ9NP56 450 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 CALML5Q9NZT1 146 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 RHCGQ9UBD6 479 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 ACAD8Q9UKU7 415 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 CLCA2Q9UQC9 943 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 IGHV1OR21-1A0A087WYE8 117 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 ZIC2O95409 532 aaPredicted RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 LGI1O95970 557 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 IL7RP16871 459 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 CHRNEQ04844 493 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 NPRL3Q12980 569 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 SRSF5Q13243 272 aaKnown RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 INAVAQ3KP66 663 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 COLEC12Q5KU26 742 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 ATAD3BQ5T9A4 648 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 GARNL3Q5VVW2 1013 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 WDR5BQ86VZ2 330 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 CTHRC1Q96CG8 243 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 ELF4Q99607 663 aaPredicted RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 PITX2Q99697 317 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 NMNAT1Q9HAN9 279 aaPredicted RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 MAT2BQ9NZL9 334 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 HSPE1-MOB4S4R3N1 261 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 HYKKA2RU49 373 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 ARRDC5A6NEK1 342 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 B4GAT1O43505 415 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 ZBTB11O95625 1053 aaPredicted RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 AGR2O95994 175 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 CRHBPP24387 322 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 PPM1FP49593 454 aaPredicted RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 CFHR1Q03591 330 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 NIPAL1Q6NVV3 410 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 HMGN2P46Q86SG4 172 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 VANGL1Q8TAA9 524 aaPredicted RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 PHF10Q8WUB8 498 aaKnown RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 ALPK1Q96QP1 1244 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 RBM38Q9H0Z9 239 aaKnown RBP19.37■□□□□ 0.69
VPS28-209ENST00000528142 SOHLH2Q9NX45 425 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 HCN4Q9Y3Q4 1203 aa19.37■□□□□ 0.69
VPS28-209ENST00000528142 FITM1A5D6W6 292 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 CASC3O15234 703 aaKnown RBP19.36■□□□□ 0.69
VPS28-209ENST00000528142 CCNB2O95067 398 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 NSA2O95478 260 aaKnown RBP19.36■□□□□ 0.69
VPS28-209ENST00000528142 SLC35E2P0CK97 266 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 ACP2P11117 423 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 GLB1P16278 677 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 NT5EP21589 574 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 DHPSP49366 369 aaPredicted RBP19.36■□□□□ 0.69
VPS28-209ENST00000528142 SKP1P63208 163 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 NR1D2Q14995 579 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 TCTE1Q5JU00 501 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 PMS2CLQ68D20 193 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 ZNF770Q6IQ21 691 aaPredicted RBP19.36■□□□□ 0.69
VPS28-209ENST00000528142 C16orf62Q7Z3J2 963 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 SETD9Q8NE22 299 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 OR9Q2Q8NGE9 314 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 DOK4Q8TEW6 326 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 CDS1Q92903 461 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 ZG16BQ96DA0 208 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 NIPSNAP1Q9BPW8 284 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 PINK1Q9BXM7 581 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 QRSL1Q9H0R6 528 aaKnown RBP19.36■□□□□ 0.69
VPS28-209ENST00000528142 PAPOLBQ9NRJ5 636 aaKnown RBP19.36■□□□□ 0.69
VPS28-209ENST00000528142 HCN3Q9P1Z3 774 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 GMPPBQ9Y5P6 360 aa19.36■□□□□ 0.69
VPS28-209ENST00000528142 M0R3H8 397 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 CT62P0C5K7 136 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 RNH1P13489 461 aaKnown RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 CBLP22681 906 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 PDX1P52945 283 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 RPP38P78345 283 aaKnown RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 CDK5R2Q13319 367 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 DUSP5Q16690 384 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 BORAQ6PGQ7 559 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 DEF8Q6ZN54 512 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 CARFQ8N187 725 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 SLC9A6Q92581 669 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 DGCR14Q96DF8 476 aaKnown RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 AHCYL2Q96HN2 611 aaKnown RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 SPRTNQ9H040 489 aaPredicted RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 KLHL3Q9UH77 587 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms