RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MRPL43Q8N983 215 aaKnown RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 OR9A2Q8NGT5 310 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 FGF13Q92913 245 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 DTD2Q96FN9 168 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 CPPED1Q9BRF8 314 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 TRIM2Q9C040 744 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 PAQR5Q9NXK6 330 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 EMC3Q9P0I2 261 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 HCN3Q9P1Z3 774 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 AHCTF1Q8WYP5 2266 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 C1orf226A1L170 272 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 FXYD1O00168 92 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 EIF3FO00303 357 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 CTDSP2O14595 271 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 TOXO94900 526 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 C1orf105O95561 183 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 SMIM18P0DKX4 95 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 ACPPP15309 386 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF823P16415 610 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 PPP5CP53041 499 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 SHC2P98077 582 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 CCNJQ5T5M9 372 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 TIGD4Q8IY51 512 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 RAB7BQ96AH8 199 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 TRMT2BQ96GJ1 504 aaKnown RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 PTCHD1Q96NR3 888 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 STARD5Q9NSY2 213 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 POLR2AP24928 1970 aaKnown RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 A0A1W2PRQ8 180 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 EIF1AYO14602 144 aaKnown RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 AGR2O95994 175 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 NR4A2P43354 598 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 DAPP51397 102 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 GABARAPL2P60520 117 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 TMEM44Q2T9K0 475 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 COX20Q5RI15 118 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 FRMPD2BQ6IN97 320 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF367Q7RTV3 350 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 TMEFF1Q8IYR6 380 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 Q8N402 240 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 FANK1Q8TC84 345 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 COMMD4Q9H0A8 199 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 SMURF1Q9HCE7 757 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 PAK6Q9NQU5 681 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 FKBP14Q9NWM8 211 aa11.1□□□□□ -0.63
SYNPO-204ENST00000519664 AKAP7Q9P0M2 348 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-204ENST00000519664 FAM171A2A8MVW0 826 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CD2P06729 351 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 HNRNPA1P09651 372 aaKnown RBP eCLIP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 GKN3PP0CG01 181 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 MLLT3P42568 568 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 ARFIP1P53367 373 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 SLC7A9P82251 487 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CRYZQ08257 329 aaKnown RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 GARNL3Q5VVW2 1013 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 DLEU7Q6UYE1 221 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CBLL1Q75N03 491 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 LINC00471Q8N535 108 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 BBS10Q8TAM1 723 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 SUN3Q8TAQ9 357 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CPEB1Q9BZB8 566 aaKnown RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 NHSQ6T4R5 1651 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 DLGAP1O14490 977 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 UBXN7O94888 489 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CSTAP01040 98 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 C1QAP02745 245 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 PXNP49023 591 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 POU6F2P78424 691 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 TAP2Q03519 686 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CEACAM19Q7Z692 300 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 LRRC25Q8N386 305 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 CPXM2Q8N436 756 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 HSPA12BQ96MM6 686 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 ARPC5LQ9BPX5 153 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 PRR14Q9BWN1 585 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 GPR174Q9BXC1 333 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 SEC61A2Q9H9S3 476 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 TM7SF3Q9NS93 570 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 MRPL15Q9P015 296 aaKnown RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 ENPP5Q9UJA9 477 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 KIAA1217Q5T5P2 1943 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 PRKRAO75569 313 aaKnown RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 KCNK5O95279 499 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 OSMP13725 252 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 PVRP15151 417 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 GNSP15586 552 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 FAUP35544 74 aaKnown RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 UBE2UQ5VVX9 321 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 KLHL24Q6TFL4 600 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 TTLL10Q6ZVT0 673 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 ZNF627Q7L945 461 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 ATCAYQ86WG3 371 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 DENND6BQ8NEG7 585 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 OR4K13Q8NH42 304 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 RNASE11Q8TAA1 199 aaKnown RBP11.09□□□□□ -0.63
SYNPO-204ENST00000519664 GNPDA2Q8TDQ7 276 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 TESCQ96BS2 214 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 COQ8BQ96D53 544 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 MED30Q96HR3 178 aa11.09□□□□□ -0.63
SYNPO-204ENST00000519664 WDR92Q96MX6 357 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms