RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TRAM2Q15035 370 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 RAB30Q15771 203 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 LEXMQ3ZCV2 418 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 ENPP7Q6UWV6 458 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 FAM20CQ8IXL6 584 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 NLGN4XQ8N0W4 816 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 TOR1AIP2Q8NFQ8 470 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 OR6T1Q8NGN1 323 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 OR1E3Q8WZA6 343 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 IL4I1Q96RQ9 567 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 SERINC2Q96SA4 455 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 RPP25Q9BUL9 199 aaKnown RBP13.97□□□□□ -0.17
NUP54-217ENST00000514987 TWSG1Q9GZX9 223 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 NKX2-4Q9H2Z4 354 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 UGT2A1Q9Y4X1 527 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 PEX16Q9Y5Y5 336 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 DOCK9Q9BZ29 2069 aa13.97□□□□□ -0.17
NUP54-217ENST00000514987 LOC100506127A0A0U1RQW1 187 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 PNMA8CA0A1B0GUJ8 204 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 TNFSF14O43557 240 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 ADAM23O75077 832 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 PRKRAO75569 313 aaKnown RBP13.96□□□□□ -0.17
NUP54-217ENST00000514987 DBTP11182 482 aaKnown RBP13.96□□□□□ -0.17
NUP54-217ENST00000514987 MMP11P24347 488 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 TLX1P31314 330 aaPredicted RBP13.96□□□□□ -0.17
NUP54-217ENST00000514987 PRKAR1BP31321 381 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 GIPRP48546 466 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 MAN2A2P49641 1150 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 MRPS21P82921 87 aaKnown RBP13.96□□□□□ -0.17
NUP54-217ENST00000514987 PRKCDQ05655 676 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 TSTQ16762 297 aaKnown RBP13.96□□□□□ -0.17
NUP54-217ENST00000514987 ZNF181Q2M3W8 571 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 KLHL22Q53GT1 634 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 ZNF311Q5JNZ3 666 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 C16orf62Q7Z3J2 963 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 MORN4Q8NDC4 146 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 PROKR2Q8NFJ6 384 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 OR9Q1Q8NGQ5 310 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 SNRNP27Q8WVK2 155 aaKnown RBP13.96□□□□□ -0.17
NUP54-217ENST00000514987 MACROD1Q9BQ69 325 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 TAPBPLQ9BX59 468 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 MAN2C1Q9NTJ4 1040 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 SLC6A14Q9UN76 642 aa13.96□□□□□ -0.17
NUP54-217ENST00000514987 POM121BA6NF01 834 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 AGAP5A6NIR3 686 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 SOX14O95416 240 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TP53P04637 393 aaPredicted RBP13.96□□□□□ -0.18
NUP54-217ENST00000514987 TNNI3P19429 210 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 ENDOUP21128 410 aaKnown RBP13.96□□□□□ -0.18
NUP54-217ENST00000514987 DRD1P21728 446 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 HNRNPA2B1P22626 353 aaKnown RBP13.96□□□□□ -0.18
NUP54-217ENST00000514987 MC3RP41968 323 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TAS2R41P59536 307 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 YPEL5P62699 121 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 PPP2CBP62714 309 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 PPP2CAP67775 309 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 CDK5Q00535 292 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TNFRSF17Q02223 184 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 ZNF91Q05481 1191 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 ST3GAL3Q11203 375 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 FOXD4Q12950 439 aaPredicted RBP13.96□□□□□ -0.18
NUP54-217ENST00000514987 GINS1Q14691 196 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 SPHARQ15513 63 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TMEM44Q2T9K0 475 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 FAM214AQ32MH5 1076 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 INAVAQ3KP66 663 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 VN1R4Q7Z5H5 301 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 ZER1Q7Z7L7 766 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 LRRC25Q8N386 305 aaPredicted RBP13.96□□□□□ -0.18
NUP54-217ENST00000514987 TCEANCQ8N8B7 351 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 ADAMTS15Q8TE58 950 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TM4SF19Q96DZ7 209 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 MS4A4EQ96PG1 132 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 CHCHD6Q9BRQ6 235 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 YIPF4Q9BSR8 244 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TEX12Q9BXU0 123 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 OR51E2Q9H255 320 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 SLC38A1Q9H2H9 487 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 CRNNQ9UBG3 495 aaPredicted RBP13.96□□□□□ -0.18
NUP54-217ENST00000514987 SEC14L4Q9UDX3 406 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 ZNF232Q9UNY5 417 aa13.96□□□□□ -0.18
NUP54-217ENST00000514987 TICRRQ7Z2Z1 1910 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 WASHC1A8K0Z3 465 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 ARHGAP33O14559 1287 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 CYP7B1O75881 506 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 EPPINO95925 133 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 STATHP02808 62 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 ZNF888P0CJ79 500 aaPredicted RBP13.95□□□□□ -0.18
NUP54-217ENST00000514987 SMIM10L1P0DMW3 83 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 HOXB3P14651 431 aaPredicted RBP13.95□□□□□ -0.18
NUP54-217ENST00000514987 COL9A1P20849 921 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 CPN2P22792 545 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 CTHP32929 405 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 DUSP2Q05923 314 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 TSPAN31Q12999 210 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 KRR1Q13601 381 aaKnown RBP13.95□□□□□ -0.18
NUP54-217ENST00000514987 TBC1D25Q3MII6 688 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 TPRG1LQ5T0D9 272 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 HEPHL1Q6MZM0 1159 aa13.95□□□□□ -0.18
NUP54-217ENST00000514987 CDC73Q6P1J9 531 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms