RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TMEM107Q6UX40 140 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 IL20RBQ6UXL0 311 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 C16orf47Q6ZP98 133 aaPredicted RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 RTL4Q6ZR62 310 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 ZNF551Q7Z340 670 aaPredicted RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 PRICKLE2Q7Z3G6 844 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 GOLM1Q8NBJ4 401 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 GLB1L3Q8NCI6 653 aaPredicted RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 SCMH1Q96GD3 660 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 LCORQ96JN0 433 aaPredicted RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 SIGLEC12Q96PQ1 595 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 OR52B2Q96RD2 323 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 ZBTB18Q99592 522 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 CLMPQ9H6B4 373 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 CCDC134Q9H6E4 229 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 TIMMDC1Q9NPL8 285 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 NTMQ9P121 344 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 FRG2CA6NGY1 282 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 UPK1AO00322 258 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 TO15178 435 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 OR6B1O95007 311 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 NADKO95544 446 aaPredicted RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 FBXO45P0C2W1 286 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 NAGAP17050 411 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 MDH1P40925 334 aaKnown RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 KIR3DL1P43629 444 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 TMED10P49755 219 aaKnown RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 PRR5P85299 388 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 MAPKAPK3Q16644 382 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 ZNF791Q3KP31 576 aaPredicted RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 FAM98AQ8NCA5 519 aaKnown RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 DNAJB8Q8NHS0 232 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 PSMA8Q8TAA3 256 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 SPACA9Q96E40 222 aaPredicted RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 BTBD9Q96Q07 612 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 NEUROD4Q9HD90 331 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 ZIM2Q9NZV7 527 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 PCDHGB4Q9UN71 923 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 GPR55Q9Y2T6 319 aaPredicted RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 KLF13Q9Y2Y9 288 aaPredicted RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 NPFFR2Q9Y5X5 522 aa13.18□□□□□ -0.3
NUP54-216ENST00000514901 COPG1Q9Y678 874 aaKnown RBP13.18□□□□□ -0.3
NUP54-216ENST00000514901 PRSS51A0A1B0GVH4 220 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 E9PBE3 544 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 KLRC4-KLRK1H3BQV0 150 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 RNASET2O00584 256 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 EMC8O43402 210 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 SLC28A2O43868 658 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 NME2P1O60361 137 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 ERN1O75460 977 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 SLC22A3O75751 556 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 RASAL1O95294 804 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 PSMG1O95456 288 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 NME2P22392 152 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 S100A3P33764 101 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 MRPL19P49406 292 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 UFM1P61960 85 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 RPP38P78345 283 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 GUCY1A3Q02108 690 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 LRRC74AQ0VAA2 488 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 ZNHIT3Q15649 155 aaPredicted RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 INPP5JQ15735 1006 aaPredicted RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 ZCCHC12Q6PEW1 402 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 LYPD8Q6UX82 237 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 ZNF227Q86WZ6 799 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 MIER2Q8N344 545 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 CISD2Q8N5K1 135 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 SIMC1Q8NDZ2 872 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 CPT1CQ8TCG5 803 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 MOAP1Q96BY2 351 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 MAGED4Q96JG8 741 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 VSTM2LQ96N03 204 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 ITPAQ9BY32 194 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 NXF5Q9H1B4 397 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 EPN3Q9H201 632 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 FOLH1BQ9HBA9 442 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 SDR39U1Q9NRG7 319 aaPredicted RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 AGPAT4Q9NRZ5 378 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 FAM120CQ9NX05 1096 aaKnown RBP13.17□□□□□ -0.3
NUP54-216ENST00000514901 LUZP4Q9P127 313 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 SVILO95425 2214 aa13.17□□□□□ -0.3
NUP54-216ENST00000514901 TP53I11O14683 189 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 CFLARO15519 480 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 ZNF354AO60765 605 aaPredicted RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 SOX30O94993 753 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 CRYABP02511 175 aaKnown RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 IL6P05231 212 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 VIMP08670 466 aaKnown RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 CT45A8P0DMV1 189 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 CT45A9P0DMV2 189 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 TROVE2P10155 538 aaKnown RBP eCLIP13.16□□□□□ -0.3
NUP54-216ENST00000514901 ST13P50502 369 aaKnown RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 CDK9P50750 372 aaKnown RBP13.16□□□□□ -0.3
NUP54-216ENST00000514901 STX1BP61266 288 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 NTRK2Q16620 822 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 VPS26BQ4G0F5 336 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 CT45A2Q5DJT8 189 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 COLEC12Q5KU26 742 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 SLC22A10Q63ZE4 541 aa13.16□□□□□ -0.3
NUP54-216ENST00000514901 TMEM198Q66K66 360 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms