RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CPOQ8IVL8 374 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 NAXEQ8NCW5 288 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 OR4K13Q8NH42 304 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 HAVCR1Q96D42 359 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 ACTL8Q9H568 366 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 MVB12BQ9H7P6 319 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 ZNF334Q9HCZ1 680 aaPredicted RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 ALKBH4Q9NXW9 302 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 FARSAQ9Y285 508 aaKnown RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 ARHGEF15O94989 841 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 S100A6P06703 90 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 GP1BBP13224 206 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 DSC1Q08554 894 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 SNTB2Q13425 540 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 RUNX3Q13761 415 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 KEAP1Q14145 624 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 UNC5DQ6UXZ4 953 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 SLC39A5Q6ZMH5 540 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 PARS2Q7L3T8 475 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 ZNF615Q8N8J6 731 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 PDLIM5Q96HC4 596 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 MAELQ96JY0 434 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 SAMD8Q96LT4 415 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 OR2B3O76000 313 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 HNRNPA1P09651 372 aaKnown RBP eCLIP12.03□□□□□ -0.48
USP53-209ENST00000514665 GNSP15586 552 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 MC3RP41968 323 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 CDKN2CP42773 168 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 SHC2P98077 582 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 OC90Q02509 493 aaPredicted RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 DEFB110Q30KQ9 67 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 PLAG1Q6DJT9 500 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 TMEM53Q6P2H8 277 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 CBLL1Q75N03 491 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 CSNK1A1LQ8N752 337 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 Q8N9G6 341 aaPredicted RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 ANKK1Q8NFD2 765 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 SLC17A9Q9BYT1 436 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 NOP16Q9Y3C1 178 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 OR2AT4A6NND4 320 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 C12orf71A8MTZ7 269 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 C2orf74A8MZ97 194 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 TIMP2P16035 220 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 SNRPD2P62316 118 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 DEFA5Q01523 94 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 SEC23BQ15437 767 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 MCEMP1Q8IX19 187 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 RASGEF1AQ8N9B8 481 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 ZNF740Q8NDX6 193 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 WDR20Q8TBZ3 569 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 BADQ92934 168 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 ISL2Q96A47 359 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 MSLNLQ96KJ4 702 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 BRF2Q9HAW0 419 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 HCN3Q9P1Z3 774 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 AHDC1Q5TGY3 1603 aaPredicted RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 A0A1B0GTW7 788 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 RNASET2O00584 256 aaKnown RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 SPARCP09486 303 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 PIM1P11309 404 aaPredicted RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 CERS1P27544 350 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 ZNF550Q7Z398 422 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 B3GNT8Q7Z7M8 397 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 NLGN4XQ8N0W4 816 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 PELI3Q8N2H9 469 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 FAM86B1Q8N7N1 296 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 OR52E2Q8NGJ4 325 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 THAP3Q8WTV1 239 aaPredicted RBP12.03□□□□□ -0.48
USP53-209ENST00000514665 CASTOR1Q8WTX7 329 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 ITFG2Q969R8 447 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 CACNG6Q9BXT2 260 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 ACOT13Q9NPJ3 140 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 EVA1BQ9NVM1 165 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 KLRF1Q9NZS2 232 aa12.03□□□□□ -0.48
USP53-209ENST00000514665 J3KTA2 159 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 CTDSP2O14595 271 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 PSMB5P28074 263 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 MAGEA12P43365 314 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 HTRA3P83110 453 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 RPA4Q13156 261 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 MPP7Q5T2T1 576 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 FCRLBQ6BAA4 426 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 METTL2BQ6P1Q9 378 aaKnown RBP12.02□□□□□ -0.48
USP53-209ENST00000514665 FBXO42Q6P3S6 717 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 TMPRSS12Q86WS5 348 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 HCAR2Q8TDS4 363 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 CCDC107Q8WV48 283 aa12.02□□□□□ -0.48
USP53-209ENST00000514665 CPPED1Q9BRF8 314 aaPredicted RBP12.02□□□□□ -0.48
USP53-209ENST00000514665 C13orf42A0A1B0GVH6 325 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 ZSCAN5BA6NJL1 495 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 SLC22A31A6NKX4 558 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 NPIPA5E9PKD4 350 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 RNF13O43567 381 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 SCO2O43819 266 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 ADAMTS4O75173 837 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 S100GP29377 79 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 BMPR1AP36894 532 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 NR4A2P43354 598 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 PSMA6P60900 246 aaKnown RBP12.02□□□□□ -0.49
USP53-209ENST00000514665 RASGEF1BQ0VAM2 473 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms