RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TRIM23P36406 574 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 NT5C2P49902 561 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 HNRNPFP52597 415 aaKnown RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 SSTP61278 116 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 NAAAQ02083 359 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 CLPPQ16740 277 aaPredicted RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 SLC22A6Q4U2R8 563 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 CMPK2Q5EBM0 449 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 LINC00242Q5T6M2 205 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 TAF3Q5VWG9 929 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 FAM219BQ5XKK7 198 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 WSCD1Q658N2 575 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 CWC27Q6UX04 472 aaKnown RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 DLEU7Q6UYE1 221 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 ZNF600Q6ZNG1 722 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 SLC22A18ASQ8N1D0 253 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 NEK11Q8NG66 645 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 RAB3CQ96E17 227 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 NUS1Q96E22 293 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 DTD2Q96FN9 168 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 MCCC1Q96RQ3 725 aaPredicted RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 TTYH2Q9BSA4 534 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 ST6GALNAC5Q9BVH7 336 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 ZBP1Q9H171 429 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 RSPH9Q9H1X1 276 aaPredicted RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.6□□□□□ -1.99
VPS50-219ENST00000495039 HOMER3Q9NSC5 361 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 ZNF446Q9NWS9 450 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 TRIM10Q9UDY6 481 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 MLXQ9UH92 298 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 APPL1Q9UKG1 709 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 EMCNQ9ULC0 261 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 TEX264Q9Y6I9 313 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 PTPRUQ92729 1446 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 SYNJ2O15056 1496 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 NPIPA5A0A0B4J1W7 369 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 TRABD2BA6NFA1 517 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 NPIPA5E9PKD4 350 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 CYB561D2O14569 222 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 ZNF253O75346 499 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 RHBDL1O75783 438 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 SYNGR4O95473 234 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 BAG2O95816 211 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 OAS1P00973 400 aaKnown RBP2.59□□□□□ -1.99
VPS50-219ENST00000495039 ARHGDIAP52565 204 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 IST1P53990 364 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 MFAP2P55001 183 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 NLRP11P59045 1033 aaKnown RBP2.59□□□□□ -1.99
VPS50-219ENST00000495039 SRP54P61011 504 aaKnown RBP2.59□□□□□ -1.99
VPS50-219ENST00000495039 AP1B1Q10567 949 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 PPP2R5CQ13362 524 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 BTG3Q14201 252 aaPredicted RBP2.59□□□□□ -1.99
VPS50-219ENST00000495039 TIMM50Q3ZCQ8 353 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 SLC10A5Q5PT55 438 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 ACER2Q5QJU3 275 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 MARC1Q5VT66 337 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 MFSD7Q6UXD7 560 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 BNIPLQ7Z465 357 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 SLC22A16Q86VW1 577 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 PYROXD2Q8N2H3 581 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 TMEM185AQ8NFB2 350 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 EXOC6Q8TAG9 804 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 TMEM37Q8WXS4 190 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 P3H4Q92791 437 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 BIRC7Q96CA5 298 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 SPATA13Q96N96 652 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 ACCSQ96QU6 501 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 CPXM1Q96SM3 734 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 ATP6V0BQ99437 205 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 GPR174Q9BXC1 333 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 CARD9Q9H257 536 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 ADGRL4Q9HBW9 690 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 NRN1Q9NPD7 142 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 IL17CQ9P0M4 197 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 SENP1Q9P0U3 644 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 STRAPQ9Y3F4 350 aaKnown RBP2.59□□□□□ -1.99
VPS50-219ENST00000495039 ZNF175Q9Y473 711 aa2.59□□□□□ -1.99
VPS50-219ENST00000495039 RALGAPA1Q6GYQ0 2036 aa2.58□□□□□ -2
VPS50-219ENST00000495039 PRAMEF12O95522 483 aa2.58□□□□□ -2
VPS50-219ENST00000495039 IGHG3P01860 377 aa2.58□□□□□ -2
VPS50-219ENST00000495039 UMPSP11172 480 aa2.58□□□□□ -2
VPS50-219ENST00000495039 GNSP15586 552 aa2.58□□□□□ -2
VPS50-219ENST00000495039 SAA4P35542 130 aa2.58□□□□□ -2
VPS50-219ENST00000495039 RGRP47804 291 aa2.58□□□□□ -2
VPS50-219ENST00000495039 NPY2RP49146 381 aa2.58□□□□□ -2
VPS50-219ENST00000495039 CCL11P51671 97 aa2.58□□□□□ -2
VPS50-219ENST00000495039 CASP9P55211 416 aa2.58□□□□□ -2
VPS50-219ENST00000495039 LTB4RQ15722 352 aa2.58□□□□□ -2
VPS50-219ENST00000495039 PPP1R3AQ16821 1122 aa2.58□□□□□ -2
VPS50-219ENST00000495039 STOX1Q6ZVD7 989 aa2.58□□□□□ -2
VPS50-219ENST00000495039 YRDCQ86U90 279 aaKnown RBP2.58□□□□□ -2
VPS50-219ENST00000495039 BATF2Q8N1L9 274 aa2.58□□□□□ -2
VPS50-219ENST00000495039 MLKLQ8NB16 471 aa2.58□□□□□ -2
VPS50-219ENST00000495039 COLGALT1Q8NBJ5 622 aa2.58□□□□□ -2
VPS50-219ENST00000495039 CCNYQ8ND76 341 aa2.58□□□□□ -2
VPS50-219ENST00000495039 ZNF671Q8TAW3 534 aa2.58□□□□□ -2
VPS50-219ENST00000495039 URGCPQ8TCY9 931 aa2.58□□□□□ -2
VPS50-219ENST00000495039 MGARPQ8TDB4 240 aa2.58□□□□□ -2
VPS50-219ENST00000495039 CRYGNQ8WXF5 182 aa2.58□□□□□ -2
VPS50-219ENST00000495039 TMEM45BQ96B21 275 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms