RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	RIPPLY2	Q5TAB7	128 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	HLA-DQA1	Q5Y7H0	255 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	TIFAB	Q6ZNK6	161 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	WDR53	Q7Z5U6	358 aa	Predicted RBP	10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	C17orf47	Q8NEP4	570 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	OR52R1	Q8NGF1	315 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	APIP	Q96GX9	242 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	ZNF382	Q96SR6	550 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	TIMP4	Q99727	224 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	GSTO2	Q9H4Y5	243 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	QPCTL	Q9NXS2	382 aa		10.64	□□□□□ -0.71
VTI1A-208	ENST00000494728	NAV3	Q8IVL0	2385 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	UBFD1	O14562	309 aa	Known RBP	10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TP53I11	O14683	189 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	UGT2B11	O75310	529 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TRAPPC6A	O75865	159 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	MASP1	P48740	699 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	EMD	P50402	254 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	ZNF136	P52737	540 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	CORO7	P57737	925 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	MAP4K2	Q12851	820 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	GLE1	Q53GS7	698 aa	Known RBP	10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	ZNF628	Q5EBL2	1059 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	WIPI1	Q5MNZ9	446 aa	Predicted RBP	10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TBCEL	Q5QJ74	424 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	SCIMP	Q6UWF3	145 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	PLXDC2	Q6UX71	529 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	ANGPTL8	Q6UXH0	198 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	NPSR1	Q6W5P4	371 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	GPRIN3	Q6ZVF9	776 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TMEM200A	Q86VY9	491 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	LIX1	Q8N485	282 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	MNS1	Q8NEH6	495 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	MYRIP	Q8NFW9	859 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	OR7G1	Q8NGA0	311 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	OR9A2	Q8NGT5	310 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	OMA1	Q96E52	524 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	C11orf24	Q96F05	449 aa	Predicted RBP	10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TMEM41A	Q96HV5	264 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	SH3GL2	Q99962	352 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	EBPL	Q9BY08	206 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	UGT2B28	Q9BY64	529 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	PRDM14	Q9GZV8	571 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TSPYL1	Q9H0U9	437 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TNFRSF12A	Q9NP84	129 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	AHSP	Q9NZD4	102 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	B4GALT7	Q9UBV7	327 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	BCAP29	Q9UHQ4	241 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	SNX6	Q9UNH7	406 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	DLGAP4	Q9Y2H0	992 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	TIMM22	Q9Y584	194 aa		10.63	□□□□□ -0.71
VTI1A-208	ENST00000494728	GOLGA6L10	A6NI86	522 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	PCDH7	O60245	1069 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	RHOXF2B	P0C7M4	288 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	PYGB	P11216	843 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	GABRA1	P14867	456 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	BMP7	P18075	431 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	CSNK2A2	P19784	350 aa	Predicted RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	CEACAM8	P31997	349 aa	Predicted RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	SLCO1A2	P46721	670 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	TMED10	P49755	219 aa	Known RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	PRKAA2	P54646	552 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	NAGLU	P54802	743 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	NRG3	P56975	720 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	PLCXD2	Q0VAA5	305 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	CSTF3	Q12996	717 aa	Known RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	MYBPH	Q13203	477 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	SLC29A2	Q14542	456 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	RASA2	Q15283	850 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	SLC25A35	Q3KQZ1	300 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	C6orf163	Q5TEZ5	329 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	TMEM198	Q66K66	360 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	TIGD3	Q6B0B8	471 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	VASN	Q6EMK4	673 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	YRDC	Q86U90	279 aa	Known RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	ZZZ3	Q8IYH5	903 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	WDSUB1	Q8N9V3	476 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	FAM83F	Q8NEG4	500 aa	Predicted RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	KAT2A	Q92830	837 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	EXOSC8	Q96B26	276 aa	Known RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	L3HYPDH	Q96EM0	354 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	LCOR	Q96JN0	433 aa	Predicted RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	SECISBP2	Q96T21	854 aa	Known RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	RHOXF2	Q9BQY4	288 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	ZNF559	Q9BR84	538 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	OSBPL11	Q9BXB4	747 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	C12orf65	Q9H3J6	166 aa	Known RBP	10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	METTL7A	Q9H8H3	244 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	SERHL	Q9NQF3	203 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	VPS29	Q9UBQ0	182 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	KCNN3	Q9UGI6	736 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	TBK1	Q9UHD2	729 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	MCM8	Q9UJA3	840 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	UTS2R	Q9UKP6	389 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	MAPRE3	Q9UPY8	281 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	CAMK2A	Q9UQM7	478 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728	PCDHGB3	Q9Y5G1	929 aa		10.62	□□□□□ -0.71
VTI1A-208	ENST00000494728		A0A1W2PPM1	405 aa		10.61	□□□□□ -0.71
VTI1A-208	ENST00000494728	CAPN14	A8MX76	684 aa		10.61	□□□□□ -0.71
VTI1A-208	ENST00000494728		G3V2L1	256 aa		10.61	□□□□□ -0.71

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