RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 FZD2Q14332 565 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 IRF3Q14653 427 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 GPR19Q15760 415 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CTF1Q16619 201 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 MOGQ16653 247 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 RSPO4Q2I0M5 234 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 RPS26P11Q5JNZ5 115 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 DCST1Q5T197 706 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 SLX4IPQ5VYV7 408 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 KLHL17Q6TDP4 642 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 ABHD13Q7L211 337 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 FAM20CQ8IXL6 584 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CCDC116Q8IYX3 515 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 MAML2Q8IZL2 1156 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 OR2L13Q8N349 312 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 ZNF655Q8N720 491 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 SUMF1Q8NBK3 374 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 TOR1AIP2Q8NFQ8 470 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 OR13H1Q8NG92 308 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 XAGE5Q8WWM1 108 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 HOXB13Q92826 284 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 DACH2Q96NX9 599 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 COL21A1Q96P44 957 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CSF3RQ99062 836 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 IER2Q9BTL4 223 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 FUNDC2Q9BWH2 189 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 ACTRT3Q9BYD9 372 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 POLR2J2Q9GZM3 115 aaKnown RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 CHRNA10Q9GZZ6 450 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 POLR2J3Q9H1A7 115 aaKnown RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 C6orf106Q9H6K1 298 aaPredicted RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 EVA1AQ9H8M9 152 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 LIN28AQ9H9Z2 209 aaKnown RBP10.09□□□□□ -0.79
USP4-214ENST00000491791 CD93Q9NPY3 652 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 ENAMQ9NRM1 1142 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 SEC14L3Q9UDX4 400 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 GMEB2Q9UKD1 530 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 CA5BQ9Y2D0 317 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 SLC9A8Q9Y2E8 581 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 F5P12259 2224 aa10.09□□□□□ -0.79
USP4-214ENST00000491791 DNAH14Q0VDD8 3507 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 A0A0G2JN53 185 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 TRBV4-1A0A0J9YWV2 114 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 A0A1W2PPC4 97 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 A0A1W2PPW3 197 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 WASHC1A8K0Z3 465 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 PTGES3LE9PB15 166 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 B3GALT2O43825 422 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 FAM20BO75063 409 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 ZNF217O75362 1048 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 BCAS1O75363 584 aaPredicted RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 INMTO95050 263 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 EPPINO95925 133 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 MT-ND2P03891 347 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CDK1P06493 297 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CHRM4P08173 479 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 ZNF888P0CJ79 500 aaPredicted RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 ALOX12P18054 663 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 MAGP20916 626 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CHMP24386 653 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 TLX1P31314 330 aaPredicted RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 MAP3K8P41279 467 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 SLC15A1P46059 708 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 ST13P50502 369 aaKnown RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 EMP3P54852 163 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 RAB8AP61006 207 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 PTGES3Q15185 160 aaKnown RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 FGD3Q5JSP0 725 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 ENTPD8Q5MY95 495 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 FHL5Q5TD97 284 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 C12orf73Q69YU5 71 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 MFSD12Q6NUT3 480 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 FAM180BQ6P0A1 224 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CDC73Q6P1J9 531 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 C1orf94Q6P1W5 598 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 MRGPREQ86SM8 312 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 IQCHQ86VS3 1027 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 P3H2Q8IVL5 708 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 TAGAPQ8N103 731 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 LRRC25Q8N386 305 aaPredicted RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 ARHGEF39Q8N4T4 335 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 AQP11Q8NBQ7 271 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 KCT2Q8NC54 265 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 ZBTB44Q8NCP5 570 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 ZNF540Q8NDQ6 660 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 NUP43Q8NFH3 380 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 OR4K14Q8NGD5 310 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 OR4D11Q8NGI4 311 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 C9orf43Q8TAL5 461 aaPredicted RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 ZNF675Q8TD23 568 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 TANKQ92844 425 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CLDN23Q96B33 292 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CRELD1Q96HD1 420 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 PRRC1Q96M27 445 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 MS4A4EQ96PG1 132 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 OR7D2Q96RA2 312 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 CDCA4Q9BXL8 241 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 UCK2Q9BZX2 261 aa10.08□□□□□ -0.8
USP4-214ENST00000491791 NAA50Q9GZZ1 169 aaKnown RBP10.08□□□□□ -0.8
USP4-214ENST00000491791 SLC38A1Q9H2H9 487 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms