RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 MAPRE3Q9UPY8 281 aa15.02■□□□□ -0
MSH5-SAPCD1-206ENST00000491552 NPFFR2Q9Y5X5 522 aa15.02■□□□□ -0
MSH5-SAPCD1-206ENST00000491552 GOLGA8QA0A0J9YX86 632 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 GOLGA8OA6NCC3 632 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 FRG2CA6NGY1 282 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CAPN14A8MX76 684 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 TCP11X1B4DZS4 312 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 GOLGA8NF8WBI6 632 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ACOX3O15254 700 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 PEX1O43933 1283 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 P04436 131 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 LAMP1P11279 417 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 EPHA3P29320 983 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 PPICP45877 212 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 TMED10P49755 219 aaKnown RBP15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 GPR85P60893 370 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ZNF155Q12901 538 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 NTRK2Q16620 822 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CPTPQ5TA50 214 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 TMEM64Q6YI46 380 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SPATA19Q7Z5L4 167 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 RIMKLAQ8IXN7 391 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 OR2L13Q8N349 312 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CPSF7Q8N684 471 aaKnown RBP15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 NATD1Q8N6N6 113 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CKAP2Q8WWK9 683 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 HSPBAP1Q96EW2 488 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MAGED4Q96JG8 741 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MAELQ96JY0 434 aaKnown RBP15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 VSTM2LQ96N03 204 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SLX1AQ9BQ83 275 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 WDR55Q9H6Y2 383 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SH2D2AQ9NP31 389 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SLCO1B3Q9NPD5 702 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SACM1LQ9NTJ5 587 aa15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 C19orf53Q9UNZ5 99 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SHANK1Q9Y566 2161 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 UPK1AO00322 258 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ERN1O75460 977 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 PSMG1O95456 288 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CCL3P10147 92 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 EDN3P14138 238 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 EFNA1P20827 205 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 DRD5P21918 477 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ABCD3P28288 659 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CDK9P50750 372 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MLC1Q15049 377 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SLC9B1Q4ZJI4 515 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 NXNQ6DKJ4 435 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MAVSQ7Z434 540 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CAMKMTQ7Z624 323 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 PRR22Q8IZ63 422 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 POGLUT1Q8NBL1 392 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ST6GALNAC3Q8NDV1 305 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 FAM13CQ8NE31 585 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 OR2M7Q8NG81 312 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 OR10G3Q8NGC4 313 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 OR5M3Q8NGP4 307 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 PAQR8Q8TEZ7 354 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 NUDT8Q8WV74 236 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 COQ8BQ96D53 544 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MAGEB18Q96M61 343 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 BTBD9Q96Q07 612 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 DPY30Q9C005 99 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 BHLHE41Q9C0J9 482 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 DEPPQ9NTK1 212 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 AIG1Q9NVV5 245 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 GPR55Q9Y2T6 319 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 USH1CQ9Y6N9 552 aa15□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CNTRLQ7Z7A1 2325 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRB8 838 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 G3V3Y1 287 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ZNF195O14628 629 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 TO15178 435 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 NME6O75414 186 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CBX6O95503 412 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ALDOCP09972 364 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ZNF24P17028 368 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CNR1P21554 472 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 GNLYP22749 145 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MST1P26927 711 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 UQCRFS1P47985 274 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 TDGF1P3P51864 188 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 FBXW4P57775 412 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ALDH6A1Q02252 535 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SRSF11Q05519 484 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 PLCXD2Q0VAA5 305 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 MRPL49Q13405 166 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 RPS6KA2Q15349 733 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 HSP90B2PQ58FF3 399 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SLC22A10Q63ZE4 541 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 FAM47EQ6ZV65 393 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 SLC34A3Q8N130 599 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 FBXW8Q8N3Y1 598 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 ACTRT2Q8TDY3 377 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 OMA1Q96E52 524 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 FAM173AQ9BQD7 235 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 DUSP26Q9BV47 211 aa14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 CHCHD2Q9Y6H1 151 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-206ENST00000491552 A0A0G2JMM0 328 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms