RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 AGRPO00253 132 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 NUDT21O43809 227 aaKnown RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 ANGPTL1O95841 491 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 PTGER1P34995 402 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 MPLP40238 635 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 MASP1P48740 699 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 NCBP2P52298 156 aaKnown RBP eCLIP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 PCBP3P57721 371 aaKnown RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 DSTNP60981 165 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 KCNJ10P78508 379 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 VLDLRP98155 873 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 CDK6Q00534 326 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 CEBPEQ15744 281 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF630Q2M218 657 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 AVL9Q8NBF6 648 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 TAMM41Q96BW9 452 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 NRBF2Q96F24 287 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 ROGDIQ9GZN7 287 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 POLE4Q9NR33 117 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 ENPP5Q9UJA9 477 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 IGHV1OR21-1A0A087WYE8 117 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 IGHV5-51A0A0C4DH38 117 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 LY6G6EA0A0G2JKS1 128 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CPED1A4D0V7 1026 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 ERAL1O75616 437 aaKnown RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 NR2F6P10588 404 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 GLB1P16278 677 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 NTSP30990 170 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 HOXD11P31277 338 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CCT3P49368 545 aaKnown RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 PRIM2P49643 509 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 NCS1P62166 190 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TNFRSF17Q02223 184 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SUZ12Q15022 739 aaKnown RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 MAPK11Q15759 364 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 DEFB134Q4QY38 66 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SNAP47Q5SQN1 464 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 GUSBP11Q6P575 273 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 PRSS41Q7RTY9 318 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TSEN54Q7Z6J9 526 aaKnown RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SLCO6A1Q86UG4 719 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CEP76Q8TAP6 659 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 RERGQ96A58 199 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 C7orf34Q96L11 122 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 BBS4Q96RK4 519 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 IRF2BPLQ9H1B7 796 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 GPN2Q9H9Y4 310 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TMEM165Q9HC07 324 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 A4GALTQ9NPC4 353 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 NLGN3Q9NZ94 848 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 U3KQA8 63 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CUL9Q8IWT3 2517 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SULT1C4O75897 302 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 MT-ND2P03891 347 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 OPN1SWP03999 348 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 C8orf89P0DMQ9 161 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 ALPPL2P10696 532 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 ALOX12P18054 663 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TNFRSF1BP20333 461 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 PSMB9P28065 219 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 LIM2P55344 173 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 IFITM3Q01628 133 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CBX3Q13185 183 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SPDYE7PQ495Y7 208 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TNFAIP8L2Q6P589 184 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 ZC3H14Q6PJT7 736 aaKnown RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CEACAM20Q6UY09 585 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SVOPLQ8N434 492 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 ARHGEF39Q8N4T4 335 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 CSNK1A1LQ8N752 337 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 OR4C6Q8NH72 309 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TBC1D20Q96BZ9 403 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 AHCYL2Q96HN2 611 aaKnown RBP11.42□□□□□ -0.58
HDAC6-230ENST00000488543 TPD52L3Q96J77 140 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 INIPQ9NRY2 104 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 USE1Q9NZ43 259 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 PMF1-BGLAPU3KQ54 211 aa11.42□□□□□ -0.58
HDAC6-230ENST00000488543 SCN2AQ99250 2005 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 TMEM247A6NEH6 219 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 GPR37O15354 613 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SUV39H1O43463 412 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 GALR2O43603 387 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 FEN1P39748 380 aaKnown RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 BCAP31P51572 246 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 OCA2Q04671 838 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CRB2Q5IJ48 1285 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 TMEM64Q6YI46 380 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ABHD13Q7L211 337 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CCDC116Q8IYX3 515 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 C19orf47Q8N9M1 422 aaKnown RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SFXN5Q8TD22 340 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CCDC74AQ96AQ1 378 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SH3YL1Q96HL8 342 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 DOHHQ9BU89 302 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ADPRHL2Q9NX46 363 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 PDP1Q9P0J1 537 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 PHF11Q9UIL8 331 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 C3orf18Q9UK00 162 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 DAPP1Q9UN19 280 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ENTPD4Q9Y227 616 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms