RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ZNF808Q8N4W9 903 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 CEP112Q8N8E3 955 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PTGR2Q8N8N7 351 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ZFP62Q8NB50 900 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PSD4Q8NDX1 1056 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 UHMK1Q8TAS1 419 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 WDR20Q8TBZ3 569 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF721Q8TF20 911 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ITLN2Q8WWU7 325 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 RBM18Q96H35 190 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ART5Q96L15 291 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 DHRS1Q96LJ7 313 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 WWC2-AS2Q96NR7 200 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 RASL10BQ96S79 203 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 SERPINI1Q99574 410 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 MRPL57Q9BQC6 102 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PELOQ9BRX2 385 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 NTMT1Q9BV86 223 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 SORBS1Q9BX66 1292 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF717Q9BY31 904 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 MRPL46Q9H2W6 279 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 DDX31Q9H8H2 851 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 LIN28AQ9H9Z2 209 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 WDR41Q9HAD4 459 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 XPR1Q9UBH6 696 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 TINAGQ9UJW2 476 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PCTPQ9UKL6 214 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PPT2Q9UMR5 302 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 RNF11Q9Y3C5 154 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ATG4BQ9Y4P1 393 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 KLF2Q9Y5W3 355 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 FREM3P0C091 2139 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 NBPF19A0A087WUL8 3843 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ARHGAP10A1A4S6 786 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ACOT7O00154 380 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 HNRNPRO43390 633 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 TMPRSS11DO60235 418 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OR10H2O60403 315 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 CDC40O60508 579 aaKnown RBP eCLIP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 EEDO75530 441 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 PRKRAO75569 313 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OR6B1O95007 311 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SEMA3DO95025 777 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ETHE1O95571 254 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 GPR75O95800 540 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OTCP00480 354 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ABHD2P08910 425 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SNRPAP09012 282 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 AGAP20933 346 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 PTGER1P34995 402 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 BSGP35613 385 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 RFC3P40938 356 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SOX3P41225 446 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 NEK2P51955 445 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SMSP52788 366 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 GPR85P60893 370 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 MPEG1Q2M385 716 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 GGTA1PQ4G0N0 100 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 FRG2Q64ET8 278 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OR52E8Q6IFG1 317 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 MRM1Q6IN84 353 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 XKRXQ6PP77 449 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OPN5Q6U736 354 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 C16orf47Q6ZP98 133 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 RTL4Q6ZR62 310 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 RGS9BPQ6ZS82 235 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 TRMT10CQ7L0Y3 403 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 MILR1Q7Z6M3 343 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 LCA5Q86VQ0 697 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OR4N5Q8IXE1 308 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ST13P4Q8IZP2 240 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF321PQ8N8H1 164 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 OR52B6Q8NGF0 335 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 C16orf52Q8NHV5 167 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 NUBPLQ8TB37 319 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC22A8Q8TCC7 542 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 MTFMTQ96DP5 389 aaKnown RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 TRIM44Q96DX7 344 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 MTBPQ96DY7 904 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SENP5Q96HI0 755 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 FBXL20Q96IG2 436 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SGCZQ96LD1 299 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 FRG2BQ96QU4 278 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 CNPPD1Q9BV87 410 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ELOVL6Q9H5J4 265 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ZBTB26Q9HCK0 441 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 CHST11Q9NPF2 352 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SEMA4BQ9NPR2 832 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 AHSPQ9NZD4 102 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 NFU1Q9UMS0 254 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 SNX6Q9UNH7 406 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ENTPD4Q9Y227 616 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 MEMO1Q9Y316 297 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ASB4Q9Y574 426 aa6.28□□□□□ -1.4
CCDC88A-213ENST00000476903 ARHGAP21Q5T5U3 1957 aa6.27□□□□□ -1.4
CCDC88A-213ENST00000476903 NCKAP5O14513 1909 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PKDREJQ9NTG1 2253 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 IQANK1A0A1B0GTG1 560 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A1B0GTH9 108 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms