RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 UCN2Q96RP3 112 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NODALQ96S42 347 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TSPYL1Q9H0U9 437 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MRPL46Q9H2W6 279 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 LIME1Q9H400 295 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CALHM2Q9HA72 323 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PRM3Q9NNZ6 103 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DNAJB12Q9NXW2 375 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FOXD3Q9UJU5 478 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SLC6A5Q9Y345 797 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FLNAP21333 2647 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C15orf38-AP3S2A0A0A6YYH1 394 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 A8MT66 165 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DVL2O14641 736 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ACOX3O15254 700 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ICOSLGO75144 302 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SMIM24O75264 130 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GUCY1B2O75343 617 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TRAPPC6AO75865 159 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 URI1O94763 535 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 IL18BPO95998 194 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OTCP00480 354 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 INHBAP08476 426 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RHOXF2BP0C7M4 288 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CTAGE8P0CG41 777 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CPN1P15169 458 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CSNK2A2P19784 350 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NT5EP21589 574 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DRD5P21918 477 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 BMP5P22003 454 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CNTFP26441 200 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GCAP28676 217 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FEN1P39748 380 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PPICP45877 212 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CDH13P55290 713 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RPP38P78345 283 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CEBPEQ15744 281 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 WHAMMP3Q1A5X7 153 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 KRTAP21-3Q3LHN1 58 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FLYWCH1Q4VC44 716 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TRMT12Q53H54 448 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SLC30A6Q6NXT4 461 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TIFABQ6ZNK6 161 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CTAGE4Q8IX94 777 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PRR22Q8IZ63 422 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FAM83FQ8NEG4 500 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZPLD1Q8TCW7 415 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF675Q8TD23 568 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FAM222BQ8WU58 562 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ELOVL6Q9H5J4 265 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HEY2Q9UBP5 337 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TRPS1Q9UHF7 1281 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ST6GALNAC2Q9UJ37 374 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SLC12A4Q9UP95 1085 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 EXO1Q9UQ84 846 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CFL2Q9Y281 166 aa11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GPR55Q9Y2T6 319 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GOLGA6L10A6NI86 522 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 A6NNC1 897 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 B4DXG7 233 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TRIM49D1C9J1S8 452 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SNPHO15079 494 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 UGT2B11O75310 529 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 KRT38O76015 456 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ACTL6AO96019 429 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 IL2RAP01589 272 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CT45A8P0DMV1 189 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CT45A9P0DMV2 189 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HSD3B1P14060 373 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HSD3B2P26439 372 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SLCO1A2P46721 670 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DCAF7P61962 342 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RAE1P78406 368 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CLCQ05315 142 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 EXOSC7Q15024 291 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SF3B4Q15427 424 aaKnown RBP eCLIP11.16□□□□□ -0.623e-7■■□□□ 12.7
MSH5-SAPCD1-205ENST00000476085 UNC50Q53HI1 259 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CT45A2Q5DJT8 189 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SGO1Q5FBB7 561 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 WIPI1Q5MNZ9 446 aaPredicted RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TTC19Q6DKK2 380 aaPredicted RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NOA1Q8NC60 698 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MNS1Q8NEH6 495 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ADCY4Q8NFM4 1077 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OR1J4Q8NGS1 313 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SELENOMQ8WWX9 145 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF592Q92610 1267 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ABTB1Q969K4 478 aaPredicted RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ERP27Q96DN0 273 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OMA1Q96E52 524 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GPATCH1Q9BRR8 931 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 G6PC3Q9BUM1 346 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ITPAQ9BY32 194 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 POLDIP3Q9BY77 421 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OR2B2Q9GZK3 357 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 EPB41L4BQ9H329 900 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CCM2LQ9NUG4 571 aaPredicted RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 VPS29Q9UBQ0 182 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MTRF1LQ9UGC7 380 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PSME2Q9UL46 239 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms