RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 CKAP4Q07065 602 aaKnown RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 FOXF2Q12947 444 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 MYBPHQ13203 477 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 HSPB2Q16082 182 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 WHAMMP3Q1A5X7 153 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 FBXL19-AS1Q494R0 122 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 CT45A2Q5DJT8 189 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 ZNF628Q5EBL2 1059 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TBCELQ5QJ74 424 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 ZNF678Q5SXM1 525 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 C10orf62Q5T681 223 aaPredicted RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 HLA-DQA1Q5Y7H0 255 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 NSUN5P2Q63ZY6 315 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TMEM81Q6P7N7 255 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TIFABQ6ZNK6 161 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 PAGE2Q7Z2X7 111 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 NUP54Q7Z3B4 507 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 YRDCQ86U90 279 aaKnown RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TMEM200AQ86VY9 491 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 CCDC116Q8IYX3 515 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 VWA5B2Q8N398 1253 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 C1orf52Q8N6N3 182 aaKnown RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 CDYL2Q8N8U2 506 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 FAM83FQ8NEG4 500 aaPredicted RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 MYRIPQ8NFW9 859 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 SELENOMQ8WWX9 145 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 OMA1Q96E52 524 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 APIPQ96GX9 242 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TMEM41AQ96HV5 264 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 ZNF597Q96LX8 424 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TMEM237Q96Q45 408 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 FMO2Q99518 471 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 GPATCH1Q9BRR8 931 aaKnown RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 ACPTQ9BZG2 426 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 BRINP2Q9C0B6 783 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 CXXC4Q9H2H0 198 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 ELOVL6Q9H5J4 265 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 BRF2Q9HAW0 419 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 RASSF1Q9NS23 344 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 DNAJB12Q9NXW2 375 aaKnown RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 JKAMPQ9P055 326 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 B4GALT7Q9UBV7 327 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 ZNF629Q9UEG4 869 aaPredicted RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 FETUBQ9UGM5 382 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 UTS2RQ9UKP6 389 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 TMCO1Q9UM00 188 aa6.4□□□□□ -1.38
HDAC3-207ENST00000475549 GPR55Q9Y2T6 319 aaPredicted RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 HRNRQ86YZ3 2850 aaPredicted RBP6.4□□□□□ -1.38
HDAC3-207ENST00000475549 CACNA1CQ13936 2221 aa6.4□□□□□ -1.39
HDAC3-207ENST00000475549 ITPR3Q14573 2671 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 MBD3L4A6NDZ8 208 aaPredicted RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 MBD3L3A6NE82 208 aaPredicted RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 MBD3L5A6NJ08 208 aaPredicted RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 CAPN14A8MX76 684 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 TO15178 435 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 ZIC3O60481 467 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 KRT38O76015 456 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 SUPT7LO94864 414 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 ZWINTO95229 277 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 SNRPAP09012 282 aaKnown RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 FAM153BP0C7A2 387 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 IMPDH1P20839 514 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 CNTFP26441 200 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 UQCRC1P31930 480 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 PPICP45877 212 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 MASP1P48740 699 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 STARP49675 285 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 HTR6P50406 440 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 PRKAA2P54646 552 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 GAS1P54826 345 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 FOXA1P55317 472 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 GFRA1P56159 465 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 NRG3P56975 720 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 CORO7P57737 925 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 TRA2BP62995 288 aaKnown RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 HMGCS1Q01581 520 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 DAZAP2Q15038 168 aaPredicted RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 CEBPEQ15744 281 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 TSNAXIP1Q2TAA8 658 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 FAM153CQ494X1 144 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 TEX35Q5T0J7 233 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 SLC30A6Q6NXT4 461 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 ANGPTL8Q6UXH0 198 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 NPSR1Q6W5P4 371 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 SH2D5Q6ZV89 423 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 ADGRE4PQ86SQ3 457 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 LACC1Q8IV20 430 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 TRIM42Q8IWZ5 723 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 LIX1Q8N485 282 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 C9orf106Q8NAJ2 232 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 OR4N2Q8NGD1 307 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 OR1J4Q8NGS1 313 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 OR9A2Q8NGT5 310 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 MBD3L2Q8NHZ7 208 aaPredicted RBP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 LINC01560Q8TB33 94 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.39□□□□□ -1.39
HDAC3-207ENST00000475549 ZPLD1Q8TCW7 415 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 MZB1Q8WU39 189 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 RNF138Q8WVD3 245 aa6.39□□□□□ -1.39
HDAC3-207ENST00000475549 KAT2AQ92830 837 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms