RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TMEM41AQ96HV5 264 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 TIMP4Q99727 224 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 ZNF559Q9BR84 538 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 PRDM14Q9GZV8 571 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 NMRK1Q9NWW6 199 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 BCAP29Q9UHQ4 241 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 ACOX3O15254 700 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 TRAPPC6AO75865 159 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 KRT6AP02538 564 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 KRT6BP04259 564 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 PCSK2P16519 638 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 NAGAP17050 411 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 TAC1P20366 129 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 FLNAP21333 2647 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 PTPN6P29350 595 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 KRT6CP48668 564 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 ALDH9A1P49189 494 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 HTR6P50406 440 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 RPP38P78345 283 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 NHSL2Q5HYW2 709 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 LGSNQ5TDP6 509 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 TIGD3Q6B0B8 471 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 VASNQ6EMK4 673 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 GPRIN3Q6ZVF9 776 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 TRMT10CQ7L0Y3 403 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 WDR53Q7Z5U6 358 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 OR52R1Q8NGF1 315 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 MZB1Q8WU39 189 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 OMA1Q96E52 524 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 L3HYPDHQ96EM0 354 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 LCORQ96JN0 433 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 NODALQ96S42 347 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 FAIM2Q9BWQ8 316 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 TXLNGYQ9BZA5 131 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 EPB41L4BQ9H329 900 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 METTL7AQ9H8H3 244 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 MCM8Q9UJA3 840 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 UTS2RQ9UKP6 389 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 PSME2Q9UL46 239 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 CFL2Q9Y281 166 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 SLC6A5Q9Y345 797 aa17.17■□□□□ 0.34
CCDC88B-206ENST00000473405 AHRRA9YTQ3 701 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 GOLGA8RI6L899 631 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 PCDH7O60245 1069 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 IL3P08700 152 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 FAM153BP0C7A2 387 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 KRT15P19012 456 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 IMPDH1P20839 514 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 ATP5F1P24539 256 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 CEACAM8P31997 349 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 PTGDSP41222 190 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 PRKAA2P54646 552 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 LCP2Q13094 533 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 MYBPHQ13203 477 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 FAM153CQ494X1 144 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 EIPR1Q53HC9 387 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 ZNF628Q5EBL2 1059 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 POMZP3Q6PJE2 187 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 TNIP2Q8NFZ5 429 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 ZNF675Q8TD23 568 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 HSPBAP1Q96EW2 488 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 C11orf24Q96F05 449 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 KCNA7Q96RP8 456 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 GALNT9Q9HCQ5 603 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 EHD3Q9NZN3 535 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 DLGAP4Q9Y2H0 992 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 ZNF780BQ9Y6R6 833 aa17.16■□□□□ 0.34
CCDC88B-206ENST00000473405 HSPB2A8KAH6 182 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 GNB5O14775 395 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 UGT2B11O75310 529 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 ULK1O75385 1050 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 EPPINO95925 133 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 BMP7P18075 431 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 DRD5P21918 477 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 HMGCS1Q01581 520 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 PLCXD2Q0VAA5 305 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 HSPB2Q16082 182 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 WIPI1Q5MNZ9 446 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 ANGPTL8Q6UXH0 198 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 SPNS3Q6ZMD2 512 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 TMEM200AQ86VY9 491 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 LACC1Q8IV20 430 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 GBP7Q8N8V2 638 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 FAM83FQ8NEG4 500 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 METTL6Q8TCB7 284 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 APIPQ96GX9 242 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 BTBD9Q96Q07 612 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 SH3GL2Q99962 352 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 OSBPL11Q9BXB4 747 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 UGT2B28Q9BY64 529 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 GSTO2Q9H4Y5 243 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 ANKRA2Q9H9E1 313 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 SLC24A3Q9HC58 644 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 FETUBQ9UGM5 382 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 EMCNQ9ULC0 261 aa17.15■□□□□ 0.34
CCDC88B-206ENST00000473405 FRG2CA6NGY1 282 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 SNPHO15079 494 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 TO15178 435 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 ICOSLGO75144 302 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 CDH16O75309 829 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms