RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 SPTA1P02549 2419 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 SLC25A12O75746 678 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 IL6P05231 212 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 DRD5P21918 477 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 KRT20P35900 424 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 PPICP45877 212 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 EMDP50402 254 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 UFM1P61960 85 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 FAM174BQ3ZCQ3 159 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 SPDYE7PQ495Y7 208 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 VPS26BQ4G0F5 336 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 ZNF766Q5HY98 468 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 FHL5Q5TD97 284 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 TMEM198Q66K66 360 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 OR4F3Q6IEY1 312 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 RTL4Q6ZR62 310 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 CATSPER1Q8NEC5 780 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 MOAP1Q96BY2 351 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 LCORQ96JN0 433 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-204ENST00000463487 MARK4Q96L34 752 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 MS4A4EQ96PG1 132 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 RABEP2Q9H5N1 569 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 SNX8Q9Y5X2 465 aa18.31■□□□□ 0.52
COL9A3-204ENST00000463487 PRSS51A0A1B0GVH4 220 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 FRG2CA6NGY1 282 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 TTLL8A6PVC2 850 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 UPK1AO00322 258 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 EMC8O43402 210 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 ERN1O75460 977 aaKnown RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 PRB1P04280 392 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 SOX3P41225 446 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 ATP4BP51164 291 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 RPP38P78345 283 aaKnown RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 PLEKHN1Q494U1 663 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 SPANXN4Q5MJ08 99 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 SPINK14Q6IE38 97 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 RPUSD3Q6P087 351 aaKnown RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 IL20RBQ6UXL0 311 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 TMEM64Q6YI46 380 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 C16orf47Q6ZP98 133 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 ZNF441Q8N8Z8 693 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 GOLM1Q8NBJ4 401 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 MDS2Q8NDY4 140 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 NUP43Q8NFH3 380 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 ADIPOR1Q96A54 375 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 BTBD9Q96Q07 612 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 NSRP1Q9H0G5 558 aaKnown RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 FOLH1BQ9HBA9 442 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 KLF13Q9Y2Y9 288 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-204ENST00000463487 CSAG2Q9Y5P2 127 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 CNTRLQ7Z7A1 2325 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 COL6A6A6NMZ7 2263 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 ATRXP46100 2492 aa18.3■□□□□ 0.52
COL9A3-204ENST00000463487 OR6B1O95007 311 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 C6orf47O95873 294 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 PGRP06401 933 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 ABCB1P08183 1280 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 KRT16P08779 473 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 EFNA1P20827 205 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 SOAT1P35610 550 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 MRPL19P49406 292 aaKnown RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 PRIM2P49643 509 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 CDK9P50750 372 aaKnown RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 PRKAG1P54619 331 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 DUSP8Q13202 625 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 SQLEQ14534 574 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 MAPKAPK3Q16644 382 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 METTL21CQ5VZV1 264 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 SLC25A25Q6KCM7 469 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 PRICKLE2Q7Z3G6 844 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 TRIML2Q8N7C3 387 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 OR56A1Q8NGH5 318 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 RFWD2Q8NHY2 731 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 PSMA8Q8TAA3 256 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 SFXN5Q8TD22 340 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 SPACA9Q96E40 222 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 CHMP6Q96FZ7 201 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 VSTM2LQ96N03 204 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 SIGLEC12Q96PQ1 595 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 OR52E6Q96RD3 313 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 NXF5Q9H1B4 397 aaKnown RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 RMND5AQ9H871 391 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 ANKRA2Q9H9E1 313 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 ZCCHC3Q9NUD5 404 aaKnown RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 TMEM45AQ9NWC5 275 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 NTMQ9P121 344 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 MRTO4Q9UKD2 239 aaKnown RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 OR10H1Q9Y4A9 318 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 PCDHGA10Q9Y5H3 936 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 NPFFR2Q9Y5X5 522 aa18.29■□□□□ 0.52
COL9A3-204ENST00000463487 TLN1Q9Y490 2541 aaKnown RBP18.29■□□□□ 0.52
COL9A3-204ENST00000463487 TP53I11O14683 189 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 SUV39H1O43463 412 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 NEURL1O76050 574 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 SORBS2O94875 1100 aaKnown RBP18.28■□□□□ 0.52
COL9A3-204ENST00000463487 SOX30O94993 753 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 RASAL1O95294 804 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 SP1P08047 785 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 FBXO45P0C2W1 286 aa18.28■□□□□ 0.52
COL9A3-204ENST00000463487 NAGAP17050 411 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms