RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 SETD2Q9BYW2 2564 aaPredicted RBP14.05□□□□□ -0.16
SKA3-204ENST00000462482 MTORP42345 2549 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 HMX2A2RU54 273 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 CBR3O75828 277 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 ESRRBO95718 433 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 ATP1B1P05026 303 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 TMIGD3P0DMS9 266 aaPredicted RBP14.04□□□□□ -0.16
SKA3-204ENST00000462482 KRT20P35900 424 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 ALDH9A1P49189 494 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 SERPINB9P50453 376 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 AGFG1P52594 562 aaKnown RBP14.04□□□□□ -0.16
SKA3-204ENST00000462482 NAGLUP54802 743 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 EEF1A1P68104 462 aaKnown RBP14.04□□□□□ -0.16
SKA3-204ENST00000462482 TRADDQ15628 312 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 GGTA1PQ4G0N0 100 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 EEF1A1P5Q5VTE0 462 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 FNDC7Q5VTL7 733 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 TMEM81Q6P7N7 255 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 PAMR1Q6UXH9 720 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 ADCY4Q8NFM4 1077 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 OR4F6Q8NGB9 312 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 MBD6Q96DN6 1003 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 ITPAQ9BY32 194 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 XPR1Q9UBH6 696 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 ZNF407Q9C0G0 2248 aa14.04□□□□□ -0.16
SKA3-204ENST00000462482 INTS1Q8N201 2190 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 SPG11Q96JI7 2443 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 ESYT3A0FGR9 886 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 PRAMEF25A6NGN4 478 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 KDM4EB2RXH2 506 aaPredicted RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 CASKO14936 926 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 SNPHO15079 494 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 ICOSLGO75144 302 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 BCAS2O75934 225 aaPredicted RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 COL6A2P12110 1019 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 CPN1P15169 458 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 FOSL1P15407 271 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 ETF1P62495 437 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 SLC7A5Q01650 507 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 TRAF3Q13114 568 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 EXOSC7Q15024 291 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 PRICKLE4Q2TBC4 344 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 AAGABQ6PD74 315 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 FAM111BQ6SJ93 734 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 SAMD14Q8IZD0 417 aaPredicted RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 PLD6Q8N2A8 252 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 OR52R1Q8NGF1 315 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 LINC01560Q8TB33 94 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 POM121Q96HA1 1249 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 MRPL57Q9BQC6 102 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 SFXN3Q9BWM7 321 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 RBM24Q9BX46 236 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 MRPL46Q9H2W6 279 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 BRF2Q9HAW0 419 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 SERHLQ9NQF3 203 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 NINJ2Q9NZG7 142 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 MAT2BQ9NZL9 334 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 NFU1Q9UMS0 254 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 MAPRE3Q9UPY8 281 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 EXO1Q9UQ84 846 aaKnown RBP14.03□□□□□ -0.16
SKA3-204ENST00000462482 DTX4Q9Y2E6 619 aa14.03□□□□□ -0.16
SKA3-204ENST00000462482 ABCB7O75027 752 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 REM1O75628 298 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 S1PR1P21453 382 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 DRD5P21918 477 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 CNTFP26441 200 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 PPICP45877 212 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 DIO3P55073 304 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 TRA2BP62995 288 aaKnown RBP14.02□□□□□ -0.17
SKA3-204ENST00000462482 PSPHP78330 225 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 SRYQ05066 204 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 FOXD4Q12950 439 aaPredicted RBP14.02□□□□□ -0.17
SKA3-204ENST00000462482 ERCC6LQ2NKX8 1250 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 DCST1Q5T197 706 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 POMZP3Q6PJE2 187 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 SYT10Q6XYQ8 523 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 IFNEQ86WN2 208 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 RDH11Q8TC12 318 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 SLC44A1Q8WWI5 657 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 HGDQ93099 445 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 ISL2Q96A47 359 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 NSUN5Q96P11 429 aaKnown RBP14.02□□□□□ -0.17
SKA3-204ENST00000462482 COL21A1Q96P44 957 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 NODALQ96S42 347 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 ZBTB26Q9HCK0 441 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 GALNT9Q9HCQ5 603 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 NEUROD4Q9HD90 331 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 GIMAP4Q9NUV9 329 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 TAS2R10Q9NYW0 307 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 EHD3Q9NZN3 535 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 NDRG3Q9UGV2 375 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 CES1P1Q9UKY3 287 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 PLLPQ9Y342 182 aa14.02□□□□□ -0.17
SKA3-204ENST00000462482 PHF3Q92576 2039 aaKnown RBP14.02□□□□□ -0.17
SKA3-204ENST00000462482 C2orf72A6NCS6 295 aa14.01□□□□□ -0.17
SKA3-204ENST00000462482 FRG2CA6NGY1 282 aa14.01□□□□□ -0.17
SKA3-204ENST00000462482 CLCA1A8K7I4 914 aa14.01□□□□□ -0.17
SKA3-204ENST00000462482 PDYNP01213 254 aa14.01□□□□□ -0.17
SKA3-204ENST00000462482 KRT6AP02538 564 aa14.01□□□□□ -0.17
SKA3-204ENST00000462482 KRT6BP04259 564 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms