RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 TSPAN14Q8NG11 270 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 OR5M8Q8NGP6 311 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 TBC1D16Q8TBP0 767 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 ACTL9Q8TC94 416 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 AP2M1Q96CW1 435 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 DGCR14Q96DF8 476 aaKnown RBP5.09□□□□□ -1.59
VPS41-209ENST00000457055 CLPTM1LQ96KA5 538 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 C10orf90Q96M02 699 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 PPP1R2P1Q96PQ5 205 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 DUX5Q96PT3 197 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 XPO6Q96QU8 1125 aaKnown RBP5.09□□□□□ -1.59
VPS41-209ENST00000457055 SNX18Q96RF0 628 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 SIGLEC11Q96RL6 698 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 TEAD3Q99594 435 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 SOX7Q9BT81 388 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 TMEM43Q9BTV4 400 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 CHRDL1Q9BU40 450 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 ADI1Q9BV57 179 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 C1QTNF7Q9BXJ2 289 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 FSD1LQ9BXM9 530 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 GPR88Q9GZN0 384 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 SLC38A1Q9H2H9 487 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 HRH4Q9H3N8 390 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 ASB7Q9H672 318 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 ROPN1Q9HAT0 212 aaPredicted RBP5.09□□□□□ -1.59
VPS41-209ENST00000457055 MAGEF1Q9HAY2 307 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 USP29Q9HBJ7 922 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 SGK2Q9HBY8 427 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 YAE1D1Q9NRH1 226 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 IMP3Q9NV31 184 aaKnown RBP5.09□□□□□ -1.59
VPS41-209ENST00000457055 TAS2R9Q9NYW1 312 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 USE1Q9NZ43 259 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 DLGAP2Q9P1A6 1054 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 RHCGQ9UBD6 479 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 ACSL5Q9ULC5 683 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 CLEC4EQ9ULY5 219 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 RASD1Q9Y272 281 aa5.09□□□□□ -1.59
VPS41-209ENST00000457055 PAPPA2Q9BXP8 1791 aa5.09□□□□□ -1.6
VPS41-209ENST00000457055 NFAT5O94916 1531 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 NSD3Q9BZ95 1437 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 ABCC4O15439 1325 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 SF3B1O75533 1304 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS41-209ENST00000457055 A6NIZ1 184 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 SH2D7A6NKC9 451 aaPredicted RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 SERPINE3A8MV23 424 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 C9JVG2 144 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 GRM6O15303 877 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 MAGEB2O15479 319 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 HOXA3O43365 443 aaPredicted RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 ITGA10O75578 1167 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 MED6O75586 246 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 NADKO95544 446 aaPredicted RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 IFNA2P01563 188 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 LCKP06239 509 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 GP1BAP07359 652 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 GSTA1P08263 222 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 F7P08709 466 aaPredicted RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 ITGAMP11215 1152 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 COX4I1P13073 169 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 CEACAM1P13688 526 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 GSPT1P15170 499 aaKnown RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 PFKFB1P16118 471 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 FBLP22087 321 aaKnown RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 UGT1A4P22310 534 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 SLC6A2P23975 617 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 EPHX2P34913 555 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 CRHR1P34998 444 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 UGT1A3P35503 534 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 UGT1A5P35504 534 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 CYLC1P35663 651 aaPredicted RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 CDKN1AP38936 164 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 PXNP49023 591 aaPredicted RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 EIF2B2P49770 351 aaKnown RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 MEOX2P50222 304 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 CACNA2D1P54289 1103 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 PSPHP78330 225 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 PITPNAQ00169 270 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 SLAMF1Q13291 335 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 ITGADQ13349 1161 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 IL18R1Q13478 541 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 ALKBH1Q13686 389 aaKnown RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 PSG3Q16557 428 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 PTCHD3Q3KNS1 767 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 ZSCAN23Q3MJ62 389 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 AKIRIN2Q53H80 203 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 MTX3Q5HYI7 312 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 EARS2Q5JPH6 523 aaKnown RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 PDSS1Q5T2R2 415 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 LGSNQ5TDP6 509 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 ARHGAP40Q5TG30 622 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 HECTD2Q5U5R9 776 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 SEL1L3Q68CR1 1132 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 TIGD3Q6B0B8 471 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 DGAT2L7PQ6IED9 249 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 KIAA1324Q6UXG2 1013 aaKnown RBP5.08□□□□□ -1.6
VPS41-209ENST00000457055 GDPD4Q6W3E5 623 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 NPSR1Q6W5P4 371 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 CFAP77Q6ZQR2 320 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 ESPNLQ6ZVH7 1005 aa5.08□□□□□ -1.6
VPS41-209ENST00000457055 PAQR9Q6ZVX9 377 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms