RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 STAT5AP42229 794 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 MAN2A2P49641 1150 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 EMDP50402 254 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 GPR143P51810 404 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 LRRC74AQ0VAA2 488 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SERTAD2Q14140 314 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 LASP1Q14847 261 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SPDYE7PQ495Y7 208 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SFT2D3Q587I9 215 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ANGPTL8Q6UXH0 198 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 TMEM64Q6YI46 380 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 DTX1Q86Y01 620 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 GALNT12Q8IXK2 581 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 NLGN4XQ8N0W4 816 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 FBXW8Q8N3Y1 598 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ZNF615Q8N8J6 731 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ZSCAN1Q8NBB4 408 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 FAM13CQ8NE31 585 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 NFAM1Q8NET5 270 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 NLGN4YQ8NFZ3 816 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 OR52R1Q8NGF1 315 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 DNAJB8Q8NHS0 232 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ZNF721Q8TF20 911 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 WDR60Q8WVS4 1066 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 CCDC124Q96CT7 223 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SENP5Q96HI0 755 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 CNPPD1Q9BV87 410 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 NUDT9Q9BW91 350 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 RSPO3Q9BXY4 272 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 OR51I1Q9H343 314 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 WDR54Q9H977 334 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 NEUROD4Q9HD90 331 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ADAP2Q9NPF8 381 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ZNF223Q9UK11 482 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 C19orf53Q9UNZ5 99 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 FARSAQ9Y285 508 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 HS3ST3B1Q9Y662 390 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 GMEB1Q9Y692 573 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 CEP295Q9C0D2 2601 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 DMXL2Q8TDJ6 3036 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 HMGN4O00479 90 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 GCM2O75603 506 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 CIB2O75838 187 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 CELA2AP08217 269 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 OR12D1P0DN82 309 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ACP2P11117 423 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 MATN1P21941 496 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 RBMS1P29558 406 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 DLSTP36957 453 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 CRATP43155 626 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 EEFSECP57772 596 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 EEF1A2Q05639 463 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 FUT7Q11130 342 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 DNASE1L3Q13609 305 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 IL10RAQ13651 578 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 RTP5Q14D33 572 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 EXOSC6Q5RKV6 272 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 GALNT10Q86SR1 603 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ZZZ3Q8IYH5 903 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SAMD14Q8IZD0 417 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 VWA5B2Q8N398 1253 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ESX1Q8N693 406 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SLC16A11Q8NCK7 471 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 OR52N2Q8NGI0 321 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 OR2Y1Q8NGV0 311 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SLC35A4Q96G79 324 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 ECSITQ9BQ95 431 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SCNM1Q9BWG6 230 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 OR8D2Q9GZM6 311 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 NRSN2Q9GZP1 204 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 SEMA3GQ9NS98 782 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 DDX18Q9NVP1 670 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 TCFL5Q9UL49 500 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 PRPF19Q9UMS4 504 aaKnown RBP10.22□□□□□ -0.77
SCN9A-205ENST00000454569 L3MBTL1Q9Y468 752 aa10.22□□□□□ -0.77
SCN9A-205ENST00000454569 LAMA5O15230 3695 aa10.21□□□□□ -0.77
SCN9A-205ENST00000454569 A0A087WV62 115 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 C9J4A7 227 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 STMND1H3BQB6 276 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 SOCS6O14544 535 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 ACOT8O14734 319 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 SEC24DO94855 1032 aaPredicted RBP10.21□□□□□ -0.78
SCN9A-205ENST00000454569 IGKV3-11P04433 115 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 HSD17B1P14061 328 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 DDX5P17844 614 aaKnown RBP10.21□□□□□ -0.78
SCN9A-205ENST00000454569 WT1P19544 449 aaPredicted RBP10.21□□□□□ -0.78
SCN9A-205ENST00000454569 GALNSP34059 522 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 MAP3K8P41279 467 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 SLC37A1P57057 533 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 FUT5Q11128 374 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 PCOLCEQ15113 449 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 ELAVL1Q15717 326 aaKnown RBP10.21□□□□□ -0.78
SCN9A-205ENST00000454569 C6orf163Q5TEZ5 329 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 FBXW10Q5XX13 1052 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 MFSD12Q6NUT3 480 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 IGF2-ASQ6U949 168 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 KIRREL2Q6UWL6 708 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 CPEB2Q7Z5Q1 589 aaKnown RBP10.21□□□□□ -0.78
SCN9A-205ENST00000454569 PPP1R32Q7Z5V6 425 aa10.21□□□□□ -0.78
SCN9A-205ENST00000454569 C16orf52Q8NHV5 167 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms