RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 P2RX2Q9UBL9 471 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 RGS17Q9UGC6 210 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 UBQLN2Q9UHD9 624 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 FBXW2Q9UKT8 454 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 PSME4Q14997 1843 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 DAPL1A0PJW8 107 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 FEZF1A0PJY2 475 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 H0YIV9 168 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 C1GALT1C1LP0DN25 315 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 PIPP12273 146 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 GNSP15586 552 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 ELK1P19419 428 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 CCR6P51684 374 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 SNRPGP62308 76 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 TOR1AIP1Q5JTV8 583 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 MORN1Q5T089 497 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 C9orf64Q5T6V5 341 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 HSD11B1LQ7Z5J1 315 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 ZNF433Q8N7K0 673 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 ANGPTL6Q8NI99 470 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 CHTF18Q8WVB6 975 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 SLC5A11Q8WWX8 675 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 RFKQ969G6 155 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 ECHDC3Q96DC8 303 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 TMEM169Q96HH4 297 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 DCLRE1CQ96SD1 692 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 TMEM43Q9BTV4 400 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 C1QTNF6Q9BXI9 259 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 KCNN2Q9H2S1 579 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 OR51J1Q9H342 316 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 RANBP3Q9H6Z4 567 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 TAC3Q9UHF0 121 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 DIMT1Q9UNQ2 313 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 RASD1Q9Y272 281 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 PAPPA2Q9BXP8 1791 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 PRODHO43272 600 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 CA12O43570 354 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 SLC43A1O75387 559 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 REM1O75628 298 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 POP4O95707 220 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 C1SP09871 688 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 KELP23276 732 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 NCBP2P52298 156 aaKnown RBP eCLIP8.56□□□□□ -1.041e-14■■■□□ 18.4
COPB1-202ENST00000439561 RGS8P57771 180 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 HSF2Q03933 536 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 CRYZQ08257 329 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 MGAT3Q09327 533 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 TMEM115Q12893 351 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 GALEQ14376 348 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 ARSIQ5FYB1 569 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 CDKL4Q5MAI5 379 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 FAM27D1Q5T7N8 215 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 CCSAPQ6IQ19 270 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 VN1R5Q7Z5H4 357 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 KIF18BQ86Y91 864 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 OR4M1Q8NGD0 313 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 COQ8AQ8NI60 647 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 BBS10Q8TAM1 723 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 TREX2Q9BQ50 279 aaPredicted RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 BRF2Q9HAW0 419 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 DMRT3Q9NQL9 472 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 NANSQ9NR45 359 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 IMP3Q9NV31 184 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 KLHL28Q9NXS3 571 aa8.56□□□□□ -1.04
COPB1-202ENST00000439561 EXO1Q9UQ84 846 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 EXOSC1Q9Y3B2 195 aaKnown RBP8.56□□□□□ -1.04
COPB1-202ENST00000439561 TRBV5-4A0A0C4DH59 114 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 IRGMA1A4Y4 181 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 H0YC42 278 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 J3QLW9 94 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 GTPBP1O00178 669 aaKnown RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 OR1F1O43749 312 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 KDM4BO94953 1096 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 FGBP02675 491 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 MT-ND4P03905 459 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 TP53P04637 393 aaPredicted RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 CPEP16870 476 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 ZNF19P17023 458 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 HOXB9P17482 250 aaPredicted RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 GABRA5P31644 462 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 AP2S1P53680 142 aaPredicted RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 CLDN20P56880 219 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 TLE2Q04725 743 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 DSG2Q14126 1118 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 TRIM71Q2Q1W2 868 aaKnown RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 C11orf88Q6PI97 169 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 GDPD4Q6W3E5 623 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 LINGO2Q7L985 606 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 CXXC5Q7LFL8 322 aaKnown RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 ZER1Q7Z7L7 766 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 C17orf64Q86WR6 236 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 LAS2Q8IYD9 372 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 MEIOBQ8N635 442 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 PIGXQ8TBF5 258 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 SOCS4Q8WXH5 440 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 TTYH1Q9H313 450 aaPredicted RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 PIGUQ9H490 435 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 DDX31Q9H8H2 851 aaKnown RBP8.55□□□□□ -1.04
COPB1-202ENST00000439561 BRD7Q9NPI1 651 aa8.55□□□□□ -1.04
COPB1-202ENST00000439561 B3GNT2Q9NY97 397 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms