RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SPIN1Q9Y657 262 aaPredicted RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 KCNE3Q9Y6H6 103 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 SMIM30A4D0T7 59 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 AP3D1O14617 1153 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 ERI3O43414 337 aaKnown RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 FRS3O43559 492 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 NTN1O95631 604 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 BCL6P41182 706 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 MAN2A2P49641 1150 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 CDK5Q00535 292 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 SLC9A5Q14940 896 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 LARS2Q15031 903 aaKnown RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 BCL2A1Q16548 175 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 ARMC4Q5T2S8 1044 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 RSBN1Q5VWQ0 802 aaPredicted RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 TMEM107Q6UX40 140 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 IL17RCQ8NAC3 791 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 BBS10Q8TAM1 723 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 CAPSLQ8WWF8 208 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 SLC9A6Q92581 669 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 KLK6Q92876 244 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 SLC25A46Q96AG3 418 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 TMCO6Q96DC7 493 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 TRMT61BQ9BVS5 477 aaKnown RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 FAIM2Q9BWQ8 316 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 PITHD1Q9GZP4 211 aaPredicted RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 ANKRA2Q9H9E1 313 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 KCNK6Q9Y257 313 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 A0A087WUU8 490 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 A0A1W2PR48 441 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MSL3P1P0C860 447 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 DRD3P35462 400 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 WASP42768 502 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 RFX2P48378 723 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SMSP52788 366 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 COPZ1P61923 177 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 TRA2BP62995 288 aaKnown RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 EFNB1P98172 346 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MLLT1Q03111 559 aaPredicted RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 MAP4K2Q12851 820 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 HNRNPA0Q13151 305 aaKnown RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 TAB1Q15750 504 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 NDUFA9Q16795 377 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ZNF362Q5T0B9 420 aaPredicted RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 KIAA1161Q6NSJ0 714 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SHFQ7M4L6 423 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SUN3Q8TAQ9 357 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 GATAD2BQ8WXI9 593 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SMG7Q92540 1137 aaKnown RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 TM9SF4Q92544 642 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 RAB7BQ96AH8 199 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ZG16BQ96DA0 208 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 CNRIP1Q96F85 164 aaPredicted RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 PRRC1Q96M27 445 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SPATA5L1Q9BVQ7 753 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MARCH7Q9H992 704 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 BCL2L10Q9HD36 194 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ABCB9Q9NP78 766 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 EQTNQ9NQ60 294 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 CMAHPQ9Y471 501 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 OR52A4PA6NMU1 304 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 RFXAPO00287 272 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MID1O15344 667 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 PAK4O96013 591 aaPredicted RBP11.11□□□□□ -0.63
CD44-209ENST00000433892 TSPAN19P0C672 248 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 IL7P13232 177 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 CPEP16870 476 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MYL12AP19105 171 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 HTR3AP46098 478 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 RAB28P51157 221 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MADCAM1Q13477 382 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ENTPD8Q5MY95 495 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 CLEC12AQ5QGZ9 265 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SLC25A30Q5SVS4 291 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 C18orf63Q68DL7 685 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 RAB42Q8N4Z0 105 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ACOT4Q8N9L9 421 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 FGF11Q92914 225 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 C1GALT1C1Q96EU7 318 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 RNFT2Q96EX2 444 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 CAMK1GQ96NX5 476 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 TM9SF2Q99805 663 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 SRRQ9GZT4 340 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 C11orf49Q9H6J7 331 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 WDR26Q9H7D7 661 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 NEK6Q9HC98 313 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ZSCAN32Q9NX65 697 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 CNIH4Q9P003 139 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ACSL5Q9ULC5 683 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 PLEKHM1Q9Y4G2 1056 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 ASB4Q9Y574 426 aa11.11□□□□□ -0.63
CD44-209ENST00000433892 MUC22E2RYF6 1773 aaPredicted RBP11.1□□□□□ -0.63
CD44-209ENST00000433892 IQCMA0A1B0GVH7 501 aa11.1□□□□□ -0.63
CD44-209ENST00000433892 A0A1W2PQ09 198 aa11.1□□□□□ -0.63
CD44-209ENST00000433892 A0A1W2PQL4 384 aaPredicted RBP11.1□□□□□ -0.63
CD44-209ENST00000433892 AGRPO00253 132 aa11.1□□□□□ -0.63
CD44-209ENST00000433892 SCAMP1O15126 338 aa11.1□□□□□ -0.63
CD44-209ENST00000433892 ACADMP11310 421 aa11.1□□□□□ -0.63
CD44-209ENST00000433892 HIST1H1TP22492 207 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms