RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ETV1P50549 477 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 TMEM44Q2T9K0 475 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 ATAT1Q5SQI0 421 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 DDI2Q5TDH0 399 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 PAQR6Q6TCH4 344 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 WDR53Q7Z5U6 358 aaPredicted RBP10.66□□□□□ -0.7
USP4-205ENST00000431357 BCDIN3DQ7Z5W3 292 aaKnown RBP10.66□□□□□ -0.7
USP4-205ENST00000431357 UBE3DQ7Z6J8 389 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 IQCHQ86VS3 1027 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 TEX47Q8TBZ9 253 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 PRAP1Q96NZ9 151 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 DHRS9Q9BPW9 319 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 WFDC6Q9BQY6 131 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 DPH7Q9BTV6 452 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 ABCB9Q9NP78 766 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 SLC35C2Q9NQQ7 365 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 MAN2C1Q9NTJ4 1040 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 ZCCHC3Q9NUD5 404 aaKnown RBP10.66□□□□□ -0.7
USP4-205ENST00000431357 C5AR2Q9P296 337 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 FBXW2Q9UKT8 454 aa10.66□□□□□ -0.7
USP4-205ENST00000431357 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.66□□□□□ -0.7
USP4-205ENST00000431357 SPIN1Q9Y657 262 aaPredicted RBP10.66□□□□□ -0.7
USP4-205ENST00000431357 NUP210Q8TEM1 1887 aaPredicted RBP10.65□□□□□ -0.7
USP4-205ENST00000431357 A0A1W2PPV9 198 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 A0A1W2PQ09 198 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 FABP12A6NFH5 140 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 CENPXA8MT69 81 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 HIDE1A8MVS5 230 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 SYT5O00445 386 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 SSR2P43308 183 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 TAS2R38P59533 333 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 HNRNPA0Q13151 305 aaKnown RBP10.65□□□□□ -0.7
USP4-205ENST00000431357 ZFP69Q49AA0 526 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 MINDY4Q4G0A6 757 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 PDZK1Q5T2W1 519 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 NDUFAF5Q5TEU4 345 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 PLPP4Q5VZY2 271 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 ACSM5Q6NUN0 579 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 SLC27A4Q6P1M0 643 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 RFPL4BQ6ZWI9 263 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 C12orf40Q86WS4 652 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 LURAP1LQ8IV03 231 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 PIAS4Q8N2W9 510 aaPredicted RBP10.65□□□□□ -0.7
USP4-205ENST00000431357 UFD1Q92890 307 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 NEDD4LQ96PU5 975 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 SLC38A2Q96QD8 506 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 BBS4Q96RK4 519 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 PHOX2BQ99453 314 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 COQ7Q99807 217 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 MENTQ9BUN1 341 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 DDX28Q9NUL7 540 aaKnown RBP10.65□□□□□ -0.7
USP4-205ENST00000431357 PLEKHB1Q9UF11 243 aaPredicted RBP10.65□□□□□ -0.7
USP4-205ENST00000431357 TMA7Q9Y2S6 64 aaKnown RBP10.65□□□□□ -0.7
USP4-205ENST00000431357 PRKAB1Q9Y478 270 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 HCFC2Q9Y5Z7 792 aa10.65□□□□□ -0.7
USP4-205ENST00000431357 HTTP42858 3142 aa10.65□□□□□ -0.71
USP4-205ENST00000431357 A0A1W2PQL4 384 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 MEIOCA2RUB1 952 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CCDC182A6NF36 153 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 C1QTNF3-AMACRE9PGA6 284 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 PLD2O14939 933 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 GAAP10253 952 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CCL5P13501 91 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CSF2RAP15509 400 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 FGF9P31371 208 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 IFNA8P32881 189 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 NCBP2P52298 156 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP4-205ENST00000431357 ARFIP1P53367 373 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 GAS1P54826 345 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CSNK1G2P78368 415 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 NTHL1P78549 312 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 MXD1Q05195 221 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 ZMAT1Q5H9K5 638 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 C22orf42Q6IC83 251 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 MAMSTRQ6ZN01 415 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 QSOX2Q6ZRP7 698 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 SZRD1Q7Z422 152 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 ETFBKMTQ8IXQ9 262 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 RDH10Q8IZV5 341 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 OR56A1Q8NGH5 318 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 OR5D16Q8NGK9 328 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 OR6T1Q8NGN1 323 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 NXPE3Q969Y0 559 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 RNFT2Q96EX2 444 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 DIRAS2Q96HU8 199 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 HDAC8Q9BY41 377 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 MIXL1Q9H2W2 232 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 ANKRD19PQ9H560 264 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 ANKRA2Q9H9E1 313 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 TIGARQ9NQ88 270 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 SLC23A2Q9UGH3 650 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 ACSL5Q9ULC5 683 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 LRRK1Q38SD2 2015 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CCDC88CQ9P219 2028 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 KDM4EB2RXH2 506 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 GPR89AB7ZAQ6 455 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 PRRT4C9JH25 899 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 MAN2B1O00754 1011 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 TMCC2O75069 709 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 TIMP1P01033 207 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms