RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LINC00469Q8N7U9 141 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TMEM99Q8N816 258 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 SPERTQ8NA61 448 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 KIAA0895Q8NCT3 520 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 OR2T12Q8NG77 320 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 OR10Q1Q8NGQ4 319 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 OR52N5Q8NH56 324 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 RNASE8Q8TDE3 154 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ELP5Q8TE02 316 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ING5Q8WYH8 240 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PRCCQ92733 491 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 KIFAP3Q92845 792 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 SMARCD2Q92925 531 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TCEAL3Q969E4 200 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 CCDC51Q96ER9 411 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 SCRN2Q96FV2 425 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 C17orf77Q96MU5 243 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 CATSPER2Q96P56 530 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 SORCS2Q96PQ0 1159 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 DDX50Q9BQ39 737 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 RPP25Q9BUL9 199 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TIPINQ9BVW5 301 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 CARD6Q9BX69 1037 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 SPRTNQ9H040 489 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 IL25Q9H293 177 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PSTPIP2Q9H939 334 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PPANQ9NQ55 473 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 AGPAT5Q9NUQ2 364 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ELOVL5Q9NYP7 299 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 DAPK2Q9UIK4 370 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 KCNJ14Q9UNX9 436 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 COMMD3-BMI1R4GMX3 469 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 CACNA1IQ9P0X4 2223 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 DOCK5Q9H7D0 1870 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 IGF2RP11717 2491 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 NBEAQ8NFP9 2946 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 A0A1W2PS18 150 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ASPDHA6ND91 283 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PRSS46E5RG02 174 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SPECC1L-ADORA2AF8WAN1 911 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 H3BNX3 289 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 HIP1O00291 1037 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PRRG1O14668 218 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CHADO15335 359 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 RRP8O43159 456 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 TRAPPC3O43617 180 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 XPNPEP2O43895 674 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PFDN1O60925 122 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 HSF2BPO75031 334 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SOCS5O75159 536 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PRKRAO75569 313 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 STAMBPO95630 424 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 APBB3O95704 486 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 IGHV4-39P01824 125 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 RAF1P04049 648 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SERPING1P05155 500 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 FGF5P12034 268 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CD59P13987 128 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ACADSP16219 412 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF12P17014 697 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CALB2P22676 271 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CA6P23280 308 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 AXLP30530 894 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SFNP31947 248 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PRKCEQ02156 737 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PLOD1Q02809 727 aaPredicted RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 RASGEF1BQ0VAM2 473 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 TRAP1Q12931 704 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PLD1Q13393 1074 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SNTA1Q13424 505 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SLC35D3Q5M8T2 416 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 IL23RQ5VWK5 629 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 KRTAP5-3Q6L8H2 238 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 C11orf87Q6NUJ2 197 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 IRGCQ6NXR0 463 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 DLEU7Q6UYE1 221 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 RAD9BQ6WBX8 426 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 NIPA1Q7RTP0 329 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SLC16A9Q7RTY1 509 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 TRMT1LQ7Z2T5 733 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PRUNE1Q86TP1 453 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SATL1Q86VE3 508 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 GRAMD2AQ8IUY3 354 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 TMEM139Q8IV31 216 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 LAX1Q8IWV1 398 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CCDC63Q8NA47 563 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SIDT2Q8NBJ9 832 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CLEC1AQ8NC01 280 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 OR11H4Q8NGC9 324 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ITFG1Q8TB96 612 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 HSD17B8Q92506 261 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ALG14Q96F25 216 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ADGRG7Q96K78 797 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 NSMCE2Q96MF7 247 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF560Q96MR9 790 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF559Q9BR84 538 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 UQCC2Q9BRT2 126 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 NTPCRQ9BSD7 190 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SPZ1Q9BXG8 430 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms