RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MAT2BQ9NZL9 334 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 ADAM29Q9UKF5 820 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 TMCO1Q9UM00 188 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 PLLPQ9Y342 182 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 PCDHA9Q9Y5H5 950 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 MED12LQ86YW9 2145 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 C1orf226A1L170 272 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 PRAMEF25A6NGN4 478 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 POC1B-GALNT4F8VUJ3 575 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 SYT5O00445 386 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 SNPHO15079 494 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 PDYNP01213 254 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 ABCB1P08183 1280 aaPredicted RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 TMIGD3P0DMS9 266 aaPredicted RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 CYP4B1P13584 511 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 KLK2P20151 261 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 CTSSP25774 331 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 CDH13P55290 713 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 ETF1P62495 437 aaKnown RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 PRICKLE4Q2TBC4 344 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 TEX35Q5T0J7 233 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 TIGD3Q6B0B8 471 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 VASNQ6EMK4 673 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 SLC48A1Q6P1K1 146 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 LETMD1Q6P1Q0 360 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 C1orf52Q8N6N3 182 aaKnown RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 C9orf106Q8NAJ2 232 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 LINC01560Q8TB33 94 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 WDYHV1Q96HA8 205 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 LCORQ96JN0 433 aaPredicted RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 YIPF4Q9BSR8 244 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 LRRC1Q9BTT6 524 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 FAIM2Q9BWQ8 316 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 ZDHHC18Q9NUE0 388 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 ZNF629Q9UEG4 869 aaPredicted RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 FOXD3Q9UJU5 478 aaPredicted RBP13.24□□□□□ -0.29
SDC1-204ENST00000429035 EDARQ9UNE0 448 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 SNX6Q9UNH7 406 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.24□□□□□ -0.29
SDC1-204ENST00000429035 ZNF780BQ9Y6R6 833 aa13.24□□□□□ -0.29
SDC1-204ENST00000429035 A0A1B0GTL3 188 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 CD8B2A6NJW9 211 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 CDH16O75309 829 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 ERN1O75460 977 aaKnown RBP13.23□□□□□ -0.29
SDC1-204ENST00000429035 OTCP00480 354 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 RPS17P08708 135 aaKnown RBP13.23□□□□□ -0.29
SDC1-204ENST00000429035 PCSK2P16519 638 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 CSNK2A2P19784 350 aaPredicted RBP13.23□□□□□ -0.29
SDC1-204ENST00000429035 SERPINB9P50453 376 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 NAGLUP54802 743 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 MRPS35P82673 323 aaKnown RBP13.23□□□□□ -0.29
SDC1-204ENST00000429035 DUSP2Q05923 314 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 GALNT1Q10472 559 aaPredicted RBP13.23□□□□□ -0.29
SDC1-204ENST00000429035 FBXL19-AS1Q494R0 122 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 GGTA1PQ4G0N0 100 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 C10orf62Q5T681 223 aaPredicted RBP13.23□□□□□ -0.29
SDC1-204ENST00000429035 PLXDC2Q6UX71 529 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 PAMR1Q6UXH9 720 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 LUZP2Q86TE4 346 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 KIF18BQ86Y91 864 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 SIMC1Q8NDZ2 872 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 C17orf47Q8NEP4 570 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 SLC44A1Q8WWI5 657 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 HGDQ93099 445 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 TMUB1Q9BVT8 246 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 CXXC4Q9H2H0 198 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 PRODH2Q9UF12 536 aa13.23□□□□□ -0.29
SDC1-204ENST00000429035 MBD3L4A6NDZ8 208 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 MBD3L3A6NE82 208 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 MBD3L5A6NJ08 208 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 A8MT66 165 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 TRIM49D1C9J1S8 452 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 ICOSLGO75144 302 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 UGT2B11O75310 529 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 OR4F21O95013 312 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 CBX7O95931 251 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 ACTL6AO96019 429 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 ATP1B1P05026 303 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 S1PR1P21453 382 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 OPRM1P35372 400 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 CPOXP36551 454 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 MAGEA12P43365 314 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 FOXD4Q12950 439 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 KEAP1Q14145 624 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 NHSL2Q5HYW2 709 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 TCHHL1Q5QJ38 904 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 SLC30A6Q6NXT4 461 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 NUP54Q7Z3B4 507 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 ZNF572Q7Z3I7 529 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 IFNEQ86WN2 208 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 GCNT2Q8N0V5 402 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 MBD3L2Q8NHZ7 208 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 TRPC4APQ8TEL6 797 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 ZNF483Q8TF39 744 aaPredicted RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 TUBA1CQ9BQE3 449 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 RBM24Q9BX46 236 aaKnown RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 MRPL46Q9H2W6 279 aaKnown RBP13.22□□□□□ -0.29
SDC1-204ENST00000429035 ANKRA2Q9H9E1 313 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 SENP1Q9P0U3 644 aa13.22□□□□□ -0.29
SDC1-204ENST00000429035 DKKL1Q9UK85 242 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms