RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 IGLON5A6NGN9 336 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TVP23AA6NH52 213 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TOR1AO14656 332 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 POLR1CO15160 346 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CREB1P16220 341 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 POU3F2P20265 443 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 FPR1P21462 350 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TNFRSF4P43489 277 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TAS2R31P59538 309 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 DSC1Q08554 894 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 UGT3A2Q3SY77 523 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SLC25A44Q96H78 314 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MRI1Q9BV20 369 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OSBPL7Q9BZF2 842 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ADAMTS10Q9H324 1103 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR51B5Q9H339 312 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 FZD8Q9H461 694 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 EPHX3Q9H6B9 360 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM185BQ9H7F4 350 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PTTG2Q9NZH5 202 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MON2Q7Z3U7 1717 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 A0A1W2PQU0 124 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 LCATP04180 440 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CD48P09326 243 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 C1GALT1C1LP0DN25 315 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 POU3F4P49335 361 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF280AP59817 542 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 HTD2P86397 168 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PON2Q15165 354 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PTCHD3Q3KNS1 767 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CREB3L2Q70SY1 520 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 NUDT9Q9BW91 350 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CPEB1Q9BZB8 566 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF160Q9HCG1 818 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 OR1A2Q9Y585 309 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 LRRC30A6NM36 301 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 C9JVG2 144 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 UCHL1P09936 223 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 F2RL1P55085 397 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 DYRK1AQ13627 763 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CCL14Q16627 93 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 C3orf38Q5JPI3 329 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RTL10Q7L3V2 364 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TMPRSS12Q86WS5 348 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 GATSQ8NAP1 163 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TXNDC5Q8NBS9 432 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TSACCQ96A04 125 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 METTL2AQ96IZ6 378 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PBX4Q9BYU1 374 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 NANOGQ9H9S0 305 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CCM2LQ9NUG4 571 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 GABARAPH6UMI1 98 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SYT7O43581 403 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 GABARAPO95166 117 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SLC2A1P11166 492 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF136P52737 540 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 IRF9Q00978 393 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ECM1Q16610 540 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM107Q6UX40 140 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF704Q6ZNC4 412 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 IQCF1Q8N6M8 205 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 LSM14AQ8ND56 463 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 JPH3Q8WXH2 748 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 FBXL8Q96CD0 374 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 DCBLD2Q96PD2 775 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 NTPCRQ9BSD7 190 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PLEKHJ1Q9NW61 149 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CNOT11Q9UKZ1 510 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 MED1Q15648 1581 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 OR51F1A6NGY5 319 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 M0R233 179 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PRAMEF11O60813 436 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ATP6V1G1O75348 118 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 GBAP04062 536 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PROS1P07225 676 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 MRPL3P09001 348 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SNU13P55769 128 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 DNAJB13P59910 316 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RUNX3Q13761 415 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ARHGAP19Q14CB8 494 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 BEST3Q8N1M1 668 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 DNAJC22Q8N4W6 341 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 OR52P1PQ8NH57 321 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TANKQ92844 425 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ATOH1Q92858 354 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RDH12Q96NR8 316 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SMG9Q9H0W8 520 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 MAN2C1Q9NTJ4 1040 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SPO11Q9Y5K1 396 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 B3GALT1Q9Y5Z6 326 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 MTMR11A4FU01 709 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SLC11A1P49279 550 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 HADHBP55084 474 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RPL23AP62750 156 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 ARHGAP1Q07960 439 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SLC10A1Q14973 349 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 IL17AQ16552 155 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 KIF18BQ86Y91 864 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SGPP2Q8IWX5 399 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms