RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RECKO95980 971 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 VIPP01282 170 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 HOXC4P09017 264 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 PSMB5P28074 263 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 PPP2R1BP30154 601 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 TGFBR2P37173 567 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 KCNJ5P48544 419 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 CCT3P49368 545 aaKnown RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 TUBA1BP68363 451 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 HSPB3Q12988 150 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 FGL2Q14314 439 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 ADPRMQ3LIE5 342 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 TOR1AIP1Q5JTV8 583 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 PRAMEF8Q5VWM4 474 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 PRAMEF7Q5VXH5 474 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 ZNF770Q6IQ21 691 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 TNFAIP8L2Q6P589 184 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 BHLHB9Q6PI77 547 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 TUBA1AQ71U36 451 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 KRT73Q86Y46 540 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 SLC44A2Q8IWA5 706 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 LINC00471Q8N535 108 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 SLC15A4Q8N697 577 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 OR13H1Q8NG92 308 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 OR52J3Q8NH60 311 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 BBS10Q8TAM1 723 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 DYNC2LI1Q8TCX1 351 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 CHPT1Q8WUD6 406 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 EXOSC8Q96B26 276 aaKnown RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 SCARF2Q96GP6 870 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 SH3YL1Q96HL8 342 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 COX4I2Q96KJ9 171 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 ZNF354BQ96LW1 612 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 NIPSNAP1Q9BPW8 284 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 SPATA5L1Q9BVQ7 753 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 MRPS30Q9NP92 439 aaKnown RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 AKIP1Q9NQ31 210 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 SEMA3GQ9NS98 782 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 RLIMQ9NVW2 624 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 ZNF226Q9NYT6 803 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 SH3GLB1Q9Y371 365 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 OR1A2Q9Y585 309 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 ZFYVE26Q68DK2 2539 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 DSPPQ9NZW4 1301 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 CELSR3Q9NYQ7 3312 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 DSPP15924 2871 aaKnown RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 FAM208BQ5VWN6 2430 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 LRIT2A6NDA9 550 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 TRABD2BA6NFA1 517 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 HMGN4O00479 90 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 PCDH17O14917 1159 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 RFPL3O75679 317 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 CEACAM5P06731 702 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 CD36P16671 472 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 HNRNPA2B1P22626 353 aaKnown RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 AKT2P31751 481 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 IDH2P48735 452 aaKnown RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 CRISP1P54107 249 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 OLR1P78380 273 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 CAMK2BQ13554 666 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 KRT33BQ14525 404 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 NR1D2Q14995 579 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 DUS1LQ6P1R4 473 aaKnown RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 ADCK1Q86TW2 530 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 SLC25A45Q8N413 288 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 AQP11Q8NBQ7 271 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 OR9Q2Q8NGE9 314 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 OR2A1Q8NGT9 310 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 GGHQ92820 318 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 DPH7Q9BTV6 452 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 OSGEPL1Q9H4B0 414 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 NMNAT1Q9HAN9 279 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 BCL2L10Q9HD36 194 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 SLC35C2Q9NQQ7 365 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 CLN6Q9NWW5 311 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 NDOR1Q9UHB4 597 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 ACAD8Q9UKU7 415 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 ERGIC3Q9Y282 383 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 WDR37Q9Y2I8 494 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 PCDHGA1Q9Y5H4 931 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 A3GALT2U3KPV4 340 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 ANKRD11Q6UB99 2663 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 CCDC88CQ9P219 2028 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 ARID1BQ8NFD5 2236 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 APC2O95996 2303 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 J3KTA2 159 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 PRICKLE3O43900 615 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 SLITRK5O94991 958 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 PIPP12273 146 aaPredicted RBP13.93□□□□□ -0.18
USP4-203ENST00000415188 NDUFS1P28331 727 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 OPRL1P41146 370 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 TGM3Q08188 693 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 IRF3Q14653 427 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 SLC9A5Q14940 896 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 DUSP7Q16829 419 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 RGS21Q2M5E4 152 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 FRMPD2BQ6IN97 320 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 ZNF367Q7RTV3 350 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 ADCK2Q7Z695 626 aa13.93□□□□□ -0.18
USP4-203ENST00000415188 PLD3Q8IV08 490 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms