RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NUP214P35658 2090 aaPredicted RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 CRATP43155 626 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 KHKP50053 298 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 PGDP52209 483 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 PRKAG1P54619 331 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 SLC37A1P57057 533 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 RBBP4Q09028 425 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 LASP1Q14847 261 aaKnown RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 EXOSC7Q15024 291 aaKnown RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 FAM69BQ5VUD6 431 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 CDC73Q6P1J9 531 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 KIRREL2Q6UWL6 708 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 PPP1R32Q7Z5V6 425 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 PTRH1Q86Y79 214 aaKnown RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 LGI4Q8N135 537 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 IL22RA1Q8N6P7 574 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 HORMAD2Q8N7B1 307 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 CDRT4Q8N9R6 151 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 B3GNT7Q8NFL0 401 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 DOK4Q8TEW6 326 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 C16orf58Q96GQ5 468 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 CLPTM1LQ96KA5 538 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 IMMP1LQ96LU5 166 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 VSTM2LQ96N03 204 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 LMF2Q9BU23 707 aaKnown RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 EFHD1Q9BUP0 239 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 CNPPD1Q9BV87 410 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 SCNM1Q9BWG6 230 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 OR10A5Q9H207 317 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 SUCOQ9UBS9 1254 aaKnown RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 PRODH2Q9UF12 536 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 FAF1Q9UNN5 650 aaPredicted RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 CFL2Q9Y281 166 aa13.26□□□□□ -0.29
SF3B1-204ENST00000414963 HEMK1Q9Y5R4 338 aaPredicted RBP13.26□□□□□ -0.29
SF3B1-204ENST00000414963 SCN2AQ99250 2005 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 IGHV1-45A0A0A0MS14 117 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 IGHV3-20A0A0C4DH32 117 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 HMGN4O00479 90 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 ID4P47928 161 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 DSTNP60981 165 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 RPS18P62269 152 aaKnown RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 RPS26P62854 115 aaKnown RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 EEF1A2Q05639 463 aaKnown RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 BNIP2Q12982 314 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 TRIM25Q14258 630 aaKnown RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 MYBPC3Q14896 1274 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 PCOLCEQ15113 449 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 AP1ARQ63HQ0 302 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 ERICH5Q6P6B1 374 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 PAPD4Q6PIY7 484 aaKnown RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 NDUFAF7Q7L592 441 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 SZRD1Q7Z422 152 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 PTOV1Q86YD1 416 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 HPS6Q86YV9 775 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 METTL25Q8N6Q8 603 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 RNF148Q8N7C7 305 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 TNIP2Q8NFZ5 429 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 OR2T12Q8NG77 320 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 OR11G2Q8NGC1 345 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 C16orf52Q8NHV5 167 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 KIAA1143Q96AT1 154 aaPredicted RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 C8orf44Q96CB5 159 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 VPS50Q96JG6 964 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 IP6K3Q96PC2 410 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 STACQ99469 402 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 KCTD14Q9BQ13 255 aaPredicted RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 MESP1Q9BRJ9 268 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 NUDT9Q9BW91 350 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 OR8D2Q9GZM6 311 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 OR51I1Q9H343 314 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 MUC13Q9H3R2 512 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 PIGUQ9H490 435 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 GPN2Q9H9Y4 310 aaPredicted RBP13.25□□□□□ -0.29
SF3B1-204ENST00000414963 A4GALTQ9NPC4 353 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 DUSP22Q9NRW4 184 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 COPS7AQ9UBW8 275 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 SLC7A8Q9UHI5 535 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 BCAP29Q9UHQ4 241 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 ZNF451Q9Y4E5 1061 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 SPTBN4Q9H254 2564 aa13.25□□□□□ -0.29
SF3B1-204ENST00000414963 ELOVL7A1L3X0 281 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 PDE5AO76074 875 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 NKX2-2O95096 273 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 NUDT7P0C024 238 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 TFPTP0C1Z6 253 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 COX6A1P12074 109 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 SLC26A5P58743 744 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 TRAP1Q12931 704 aaKnown RBP13.24□□□□□ -0.29
SF3B1-204ENST00000414963 VEZF1Q14119 521 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 TGIF1Q15583 401 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 EXT1Q16394 746 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 CYP51A1Q16850 503 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 ZNF630Q2M218 657 aaPredicted RBP13.24□□□□□ -0.29
SF3B1-204ENST00000414963 GCNT6Q5T4J0 391 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 HEPHL1Q6MZM0 1159 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 TNFAIP8L2Q6P589 184 aaPredicted RBP13.24□□□□□ -0.29
SF3B1-204ENST00000414963 ANGPTL8Q6UXH0 198 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 RNF111Q6ZNA4 994 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 SLC30A8Q8IWU4 369 aa13.24□□□□□ -0.29
SF3B1-204ENST00000414963 ZZZ3Q8IYH5 903 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms