RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 NDUFAF5Q5TEU4 345 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 MARC1Q5VT66 337 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 ITPRIPL1Q6GPH6 555 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 KDELC1Q6UW63 502 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 PID1Q7Z2X4 250 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 PCGF5Q86SE9 256 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 PRPF39Q86UA1 669 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 L3MBTL4Q8NA19 623 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 PAPD5Q8NDF8 572 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 MCUQ8NE86 351 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 ZNF473Q8WTR7 871 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.92□□□□□ -1.78
CLK1-203ENST00000409769 DNASE1L2Q92874 299 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 EXOC4Q96A65 974 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 ISG20Q96AZ6 181 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 ZNF524Q96C55 264 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 LRRC45Q96CN5 670 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 SAT2Q96F10 170 aaPredicted RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 OXNAD1Q96HP4 312 aaPredicted RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 AGAP3Q96P47 875 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 SERPINB12Q96P63 405 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 TRIB3Q96RU7 358 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 BARD1Q99728 777 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 FERMT1Q9BQL6 677 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 TEX12Q9BXU0 123 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 POLR1EQ9GZS1 481 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 SLC25A51Q9H1U9 297 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 OSGEPL1Q9H4B0 414 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 DNAJC17Q9NVM6 304 aaKnown RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 HAUS2Q9NVX0 235 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 RBM22Q9NW64 420 aaKnown RBP eCLIP3.92□□□□□ -1.783e-7■■■■■ 31.5
CLK1-203ENST00000409769 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 SEPT10Q9P0V9 454 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 KLHL8Q9P2G9 620 aaPredicted RBP3.92□□□□□ -1.78
CLK1-203ENST00000409769 LHX3Q9UBR4 397 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 TBC1D29Q9UFV1 150 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 ASIC3Q9UHC3 531 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 FAM153AQ9UHL3 310 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 RSPH14Q9UHP6 348 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 GGA2Q9UJY4 613 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 ERVW-1Q9UQF0 538 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 NCOR1O75376 2440 aa3.92□□□□□ -1.78
CLK1-203ENST00000409769 PLXNB3Q9ULL4 1909 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 PRUNE2Q8WUY3 3088 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 PIKFYVEQ9Y2I7 2098 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 UNC80Q8N2C7 3258 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 NUMA1Q14980 2115 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 LOC100509620A0A075B734 347 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 LOC285095A0A1B0GVY8 99 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 PRR32B1ATL7 298 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 WASH3PC4AMC7 463 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 SPECC1L-ADORA2AF8WAN1 911 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 K7ERQ8 282 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 TRAFD1O14545 582 aaPredicted RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 DYNC1I1O14576 645 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 ALOX15BO15296 676 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 EIF3HO15372 352 aaKnown RBP eCLIP3.91□□□□□ -1.78
CLK1-203ENST00000409769 TIMM44O43615 452 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 PLXNA2O75051 1894 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 ANXA9O76027 345 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 AP2A1O95782 977 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 GSRP00390 522 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 EPOP01588 193 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 APRTP07741 180 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 MLNP12872 115 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 MSH3P20585 1137 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 NMBRP28336 390 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 ACSL1P33121 698 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 NUMBP49757 651 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 STK19P49842 368 aaPredicted RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 GEMP55040 296 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 LINC01547P58512 204 aaPredicted RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 BASP1P80723 227 aaKnown RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 CDK16Q00536 496 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 CHAF1BQ13112 559 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 CALCOCO2Q13137 446 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 ZNF235Q14590 738 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 MELKQ14680 651 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 DLG2Q15700 870 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 WDR38Q5JTN6 314 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 GCNT6Q5T4J0 391 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 C22orf39Q6P5X5 142 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 LRRC8BQ6P9F7 803 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 EMBQ6PCB8 327 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 LEKR1Q6ZMV7 388 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 RALGPS2Q86X27 583 aaPredicted RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 BBS5Q8N3I7 341 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 MREGQ8N565 214 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 OR2AP1Q8NGE2 309 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 FAM76AQ8TAV0 307 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 TM9SF4Q92544 642 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 ZNF501Q96CX3 271 aaPredicted RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 STAMBPL1Q96FJ0 436 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 PPP1R2P1Q96PQ5 205 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 F2RL3Q96RI0 385 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 FMO2Q99518 471 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 RBM4Q9BWF3 364 aaKnown RBP3.91□□□□□ -1.78
CLK1-203ENST00000409769 FUT8Q9BYC5 575 aa3.91□□□□□ -1.78
CLK1-203ENST00000409769 EGLN1Q9GZT9 426 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms