RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 NEURL3Q96EH8 262 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 FAIM2Q9BWQ8 316 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 HDHD5Q9BXW7 423 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 PRRG3Q9BZD7 231 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 SRMSQ9H3Y6 488 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 APOBEC3BQ9UH17 382 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 ASXL3Q9C0F0 2248 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 CACNB4O00305 520 aaPredicted RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 PIP5K1CO60331 668 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 DNAJB5O75953 348 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 TSPAN19P0C672 248 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 ZNF791Q3KP31 576 aaPredicted RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 NKAIN4Q8IVV8 208 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 OR4F15Q8NGB8 312 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 BBS10Q8TAM1 723 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 GRHL3Q8TE85 626 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 HMGB4Q8WW32 186 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 PIK3R3Q92569 461 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 GABARAPL3Q9BY60 117 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 TMEM38AQ9H6F2 299 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 MAT2BQ9NZL9 334 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 COMMD3Q9UBI1 195 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 ICKQ9UPZ9 632 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 OBSL1O75147 1896 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 CENPVL1A0A0U1RR11 272 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 HIST1H1TP22492 207 aaPredicted RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 CBLP22681 906 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 NR4A2P43354 598 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 CXCR4P61073 352 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 DLX2Q07687 328 aaPredicted RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 TGM3Q08188 693 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 SHHQ15465 462 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 SPHARQ15513 63 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 PGBD2Q6P3X8 592 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 FAM111BQ6SJ93 734 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 PLEKHM3Q6ZWE6 761 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 ZNF566Q969W8 418 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 QRFPRQ96P65 431 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 NKX2-4Q9H2Z4 354 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 NEUROD4Q9HD90 331 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 ZNF780BQ9Y6R6 833 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 C17orf113A0A1B0GUU1 675 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 EPOPA6NHQ4 379 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 SNPHO15079 494 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 MRPL3P09001 348 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 ACADMP11310 421 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 SOX6P35712 828 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 IGFALSP35858 605 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 RPS19P39019 145 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 PXNP49023 591 aaPredicted RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 STXBP1P61764 594 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 PRRT3Q5FWE3 981 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 PPP2R2DQ66LE6 453 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 DESI1Q6ICB0 168 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 USP43Q70EL4 1123 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 GPR151Q8TDV0 419 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 PITX2Q99697 317 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 A0A1W2PPK0 400 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 MED26O95402 600 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CEACAM5P06731 702 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 OSMP13725 252 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 GNSP15586 552 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CPN2P22792 545 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 SOX18P35713 384 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 MAGEA10P43363 369 aaPredicted RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 PCBP3P57721 371 aaKnown RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 RAB25P57735 213 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CRTC2Q53ET0 693 aaPredicted RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 PLEKHG7Q6ZR37 379 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 PRICKLE2Q7Z3G6 844 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 LAX1Q8IWV1 398 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 S100ZQ8WXG8 99 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CDS1Q92903 461 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 ZNF354BQ96LW1 612 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 THAP10Q9P2Z0 257 aaPredicted RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 NAALAD2Q9Y3Q0 740 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CELSR3Q9NYQ7 3312 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 A6NL46 340 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 NT5EP21589 574 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 PPP1CAP62136 330 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CSTF1Q05048 431 aaKnown RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 EXOSC7Q15024 291 aaKnown RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 SAXO2Q658L1 398 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 PLAG1Q6DJT9 500 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 FBXO46Q6PJ61 603 aaPredicted RBP12.6□□□□□ -0.39
VPS54-203ENST00000409558 OR2L3Q8NG85 312 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 SIPA1Q96FS4 1042 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 GIMAP4Q9NUV9 329 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CCRL2O00421 344 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 PDX1P52945 283 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 DPTQ07507 201 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 ERV3-1Q14264 604 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 SSX1Q16384 188 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 NIPAL1Q6NVV3 410 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 ZNF438Q7Z4V0 828 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 CAMKMTQ7Z624 323 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 NRMQ8IXM6 262 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 OR51L1Q8NGJ5 315 aa12.6□□□□□ -0.39
VPS54-203ENST00000409558 KLHL6Q8WZ60 621 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms