RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MLIPQ5VWP3 458 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 TTC23Q5W5X9 447 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 MRM1Q6IN84 353 aaKnown RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 COX15Q7KZN9 410 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 HIPK1Q86Z02 1210 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ADAMTS16Q8TE57 1224 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ZFP90Q8TF47 636 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 C16orf78Q8WTQ4 265 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 TM4SF18Q96CE8 201 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 PEX11GQ96HA9 241 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 MAPKAP1Q9BPZ7 522 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 TPT1P8Q9HAU6 139 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 WBP11Q9Y2W2 641 aaKnown RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ATG4BQ9Y4P1 393 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 FAM227AF5H4B4 570 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 PROM1O43490 865 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 FURINP09958 794 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 RNH1P13489 461 aaKnown RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 TCN2P20062 427 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 KDELR2P33947 212 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 XCR1P46094 333 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 TRA2BP62995 288 aaKnown RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 PPP2R2BQ00005 443 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 VAC14Q08AM6 782 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 ERV3-1Q14264 604 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 RFX4Q33E94 735 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 TBC1D25Q3MII6 688 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 VWA2Q5GFL6 755 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 OTUD3Q5T2D3 398 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 FAM71E1Q6IPT2 247 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 ISLR2Q6UXK2 745 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 CBLL1Q75N03 491 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 EIF3MQ7L2H7 374 aaKnown RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 DTX1Q86Y01 620 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 PTOV1Q86YD1 416 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF786Q8N393 782 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 NATD1Q8N6N6 113 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 OR4A15Q8NGL6 344 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 NKD1Q969G9 470 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 FBXL20Q96IG2 436 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 GABARAPL1Q9H0R8 117 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 VCX3AQ9NNX9 186 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 MKKSQ9NPJ1 570 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 LYARQ9NX58 379 aaKnown RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 MS4A12Q9NXJ0 267 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 SH3BP4Q9P0V3 963 aa12.58□□□□□ -0.4
LIMS1-204ENST00000409441 GPN3Q9UHW5 284 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 EXO1Q9UQ84 846 aaKnown RBP12.58□□□□□ -0.4
LIMS1-204ENST00000409441 A0A1W2PR48 441 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 C9J4A7 227 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 CYR61O00622 381 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 GUCY1B2O75343 617 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 SEMG1P04279 462 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 DDX5P17844 614 aaKnown RBP12.57□□□□□ -0.4
LIMS1-204ENST00000409441 CPN2P22792 545 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 PEX19P40855 299 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 GSTM5P46439 218 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 TAS2R50P59544 299 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 OCA2Q04671 838 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 C2orf80Q0P641 193 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 C18orf63Q68DL7 685 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 ANKRD26P1Q6NSI1 321 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 SHQ1Q6PI26 577 aaKnown RBP12.57□□□□□ -0.4
LIMS1-204ENST00000409441 ZDHHC21Q8IVQ6 265 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 PNPT1Q8TCS8 783 aaKnown RBP12.57□□□□□ -0.4
LIMS1-204ENST00000409441 PPCDCQ96CD2 204 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 RAD21L1Q9H4I0 556 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 IL1RAPQ9NPH3 570 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 PAPOLBQ9NRJ5 636 aaKnown RBP12.57□□□□□ -0.4
LIMS1-204ENST00000409441 PTTG2Q9NZH5 202 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 CTSFQ9UBX1 484 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 PHF11Q9UIL8 331 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 SPACA6W5XKT8 324 aa12.57□□□□□ -0.4
LIMS1-204ENST00000409441 IGLV3-12A0A075B6K2 115 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 MED19A0JLT2 244 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-204ENST00000409441 VSTM2BA6NLU5 285 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 DPM1O60762 260 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 TBX19O60806 448 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 B4GALT2O60909 372 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 JRKO75564 520 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 OR6B1O95007 311 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF682O95780 498 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 TLX1P31314 330 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-204ENST00000409441 PCGF2P35227 344 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 DCTP40126 519 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 STAT5AP42229 794 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 RAB38P57729 211 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 RBBP4Q09028 425 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 TGIF1Q15583 401 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 LRRC23Q53EV4 343 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF385BQ569K4 471 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 MRPL14Q6P1L8 145 aaKnown RBP12.56□□□□□ -0.4
LIMS1-204ENST00000409441 PIWIL3Q7Z3Z3 882 aaKnown RBP12.56□□□□□ -0.4
LIMS1-204ENST00000409441 LAPTM4BQ86VI4 370 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 IL22RA1Q8N6P7 574 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF555Q8NEP9 628 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 STT3BQ8TCJ2 826 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 CT55Q8WUE5 264 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 FGF11Q92914 225 aa12.56□□□□□ -0.4
LIMS1-204ENST00000409441 FKBP10Q96AY3 582 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms