RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 GSK3BP49841 420 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 DSTNP60981 165 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 HPCAP84074 193 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ZNF155Q12901 538 aaPredicted RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 DNASE1L3Q13609 305 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 SELPLGQ14242 412 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 LASP1Q14847 261 aaKnown RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 SFT2D3Q587I9 215 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 PIGGQ5H8A4 983 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 INTS11Q5TA45 600 aaKnown RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 HLA-DQA1Q5Y7H0 255 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 LCN10Q6JVE6 187 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ZCCHC12Q6PEW1 402 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 FAM111BQ6SJ93 734 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ZNF517Q6ZMY9 492 aaPredicted RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 PROSER1Q86XN7 944 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 HPS6Q86YV9 775 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 SLC30A8Q8IWU4 369 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 OR2L13Q8N349 312 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 MORN4Q8NDC4 146 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 OR2Y1Q8NGV0 311 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 CT55Q8WUE5 264 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 REXO5Q96IC2 774 aaKnown RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 CLPTM1LQ96KA5 538 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 EFHD1Q9BUP0 239 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ACTRT3Q9BYD9 372 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 TRIM8Q9BZR9 551 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 OR8D2Q9GZM6 311 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 KAT8Q9H7Z6 458 aaKnown RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 SLC6A13Q9NSD5 602 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 SUCOQ9UBS9 1254 aaKnown RBP13.26□□□□□ -0.29
SKA1-202ENST00000398452 PACSIN3Q9UKS6 424 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ERVK-19Q9WJR5 959 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 RAXQ9Y2V3 346 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 GMEB1Q9Y692 573 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ZZEF1O43149 2961 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 COL27A1Q8IZC6 1860 aaPredicted RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 A0A1W2PNU3 283 aaPredicted RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 PRORSD1PA6NEY8 169 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 TTC36A6NLP5 189 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 UPK1AO00322 258 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 RECKO95980 971 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 HMGN2P05204 90 aaKnown RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 ALOX5P09917 674 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 HOXB9P17482 250 aaPredicted RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 HTR1EP28566 365 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 RBBP4Q09028 425 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 CEACAM7Q14002 265 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 FLOT2Q14254 428 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 TRMT12Q53H54 448 aaKnown RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 TNFAIP8L2Q6P589 184 aaPredicted RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 IGF2-ASQ6U949 168 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 RNF111Q6ZNA4 994 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 SLC29A4Q7RTT9 530 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 CPEB2Q7Z5Q1 589 aaKnown RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 ANKRD37Q7Z713 158 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 RAB43Q86YS6 212 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 SHISA5Q8N114 240 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 CDRT4Q8N9R6 151 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 C11orf65Q8NCR3 313 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 OR52R1Q8NGF1 315 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 SLC9A6Q92581 669 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 FBXL20Q96IG2 436 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 OR10A5Q9H207 317 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 OR51I1Q9H343 314 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 AKIRIN1Q9H9L7 192 aaPredicted RBP13.25□□□□□ -0.29
SKA1-202ENST00000398452 MAGEL2Q9UJ55 1249 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 ANGPT4Q9Y264 503 aa13.25□□□□□ -0.29
SKA1-202ENST00000398452 KIF26BQ2KJY2 2108 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 TGFBR3LH3BV60 316 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 CT62P0C5K7 136 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 STAT5AP42229 794 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 CASP9P55211 416 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 TRAP1Q12931 704 aaKnown RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 TRIM25Q14258 630 aaKnown RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 SSPNQ14714 243 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 EXOSC7Q15024 291 aaKnown RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 ZNF630Q2M218 657 aaPredicted RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 CDC73Q6P1J9 531 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 PGM2L1Q6PCE3 622 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 PAPD4Q6PIY7 484 aaKnown RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 LANCL3Q6ZV70 420 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 TIPARPQ7Z3E1 657 aaKnown RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 C16orf62Q7Z3J2 963 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 NET1Q7Z628 596 aaPredicted RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 DHFR2Q86XF0 187 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 MICU2Q8IYU8 434 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 DOK4Q8TEW6 326 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 XAGE5Q8WWM1 108 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 STMN2Q93045 179 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 FAM162AQ96A26 154 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 CTHRC1Q96CG8 243 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 ASB9Q96DX5 294 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 SENP5Q96HI0 755 aaPredicted RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 YIPF4Q9BSR8 244 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 IKZF5Q9H5V7 419 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 TRIM45Q9H8W5 580 aaPredicted RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 GPN2Q9H9Y4 310 aaPredicted RBP13.24□□□□□ -0.29
SKA1-202ENST00000398452 CALML5Q9NZT1 146 aa13.24□□□□□ -0.29
SKA1-202ENST00000398452 NTMQ9P121 344 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms