RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF226Q9NYT6 803 aa9.12□□□□□ -0.95
COL6A3-204ENST00000392003 DIMT1Q9UNQ2 313 aaKnown RBP9.12□□□□□ -0.95
COL6A3-204ENST00000392003 KCNK6Q9Y257 313 aa9.12□□□□□ -0.95
COL6A3-204ENST00000392003 MAU2Q9Y6X3 613 aa9.12□□□□□ -0.95
COL6A3-204ENST00000392003 NUP210Q8TEM1 1887 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 LOC100506127A0A0U1RQW1 187 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ST8SIA5O15466 376 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ERAL1O75616 437 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CHRM5P08912 532 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ALOX5P09917 674 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 OR3A3P47888 321 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CSNK1G2P78368 415 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 PRDX1Q06830 199 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SMAD4Q13485 552 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SLC9A5Q14940 896 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 IRF4Q15306 451 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TMEM35AQ53FP2 167 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 KIAA1324Q6UXG2 1013 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 AKAP14Q86UN6 197 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CCDC36Q8IYA8 594 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 FAM46DQ8NEK8 389 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 INSM2Q96T92 566 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 DPH7Q9BTV6 452 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TEX101Q9BY14 249 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SLAMF7Q9NQ25 335 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 MBNL1Q9NR56 388 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TEX10Q9NXF1 929 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SLC13A4Q9UKG4 626 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ENTPD4Q9Y227 616 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SLC9A8Q9Y2E8 581 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TRPM6Q9BX84 2022 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 PRAMEF25A6NGN4 478 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 LINC00587B1AMM8 73 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ANHXE9PGG2 379 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 FAAHO00519 579 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TMPRSS11DO60235 418 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 GASTP01350 101 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 S100A6P06703 90 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 FCARP24071 287 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 DRD3P35462 400 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SLC19A1P41440 591 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 KHKP50053 298 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 PRKAG1P54619 331 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 IFITM3Q01628 133 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 C19orf57Q0VDD7 668 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TIMM50Q3ZCQ8 353 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ARMCX4Q5H9R4 360 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CCDC103Q8IW40 242 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 SIGLEC11Q96RL6 698 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TIMM29Q9BSF4 260 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CD93Q9NPY3 652 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 AKIP1Q9NQ31 210 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 NCKAP1Q9Y2A7 1128 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 E9PQ18 207 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 TLR4O00206 839 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 NUPL2O15504 423 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 UGT2B17O75795 530 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 MFN2O95140 757 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 OR12D1P0DN82 309 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CHMP24386 653 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 GADD45AP24522 165 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CNR2P34972 360 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 LIPAP38571 399 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 NCBP2P52298 156 aaKnown RBP eCLIP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 BLVRAP53004 296 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 AGBL4Q5VU57 503 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 MTSS1LQ765P7 747 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 MINDY2Q8NBR6 621 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 FBXW5Q969U6 566 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ELSPBP1Q96BH3 223 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 ZNF354BQ96LW1 612 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 NRTNQ99748 197 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 OR51I1Q9H343 314 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 DDX31Q9H8H2 851 aaKnown RBP9.11□□□□□ -0.95
COL6A3-204ENST00000392003 C11orf16Q9NQ32 467 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 FBXO8Q9NRD0 319 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 CACNG2Q9Y698 323 aa9.11□□□□□ -0.95
COL6A3-204ENST00000392003 A0A1W2PQU0 124 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 M0R129 80 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 OSMP13725 252 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 HOXB2P14652 356 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 NTSR1P30989 418 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 UGT2B10P36537 528 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 TGFBR2P37173 567 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 EIF2DP41214 584 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 CRISP3P54108 245 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 PCBP4P57723 403 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 RPS21P63220 83 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 MED22Q15528 200 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ZNF404Q494X3 552 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 AGAP7PQ5VUJ5 663 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 KLHL17Q6TDP4 642 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ZNF367Q7RTV3 350 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 SRFBP1Q8NEF9 429 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 ZNF764Q96H86 408 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 FNDC11Q9BVV2 318 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 POLR2J3Q9H1A7 115 aaKnown RBP9.1□□□□□ -0.95
COL6A3-204ENST00000392003 MMP27Q9H306 513 aa9.1□□□□□ -0.95
COL6A3-204ENST00000392003 MVB12BQ9H7P6 319 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms