RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS53-202ENST00000389040 PRAMEF17Q5VTA0 474 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 MRPL14Q6P1L8 145 aaKnown RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 ABHD17CQ6PCB6 329 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 PAGE2Q7Z2X7 111 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 ZDHHC21Q8IVQ6 265 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 OR5K1Q8NHB7 308 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 COL26A1Q96A83 441 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 MTERF3Q96E29 417 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 MMABQ96EY8 250 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 IP6K3Q96PC2 410 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 SERINC2Q96SA4 455 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 RBM38Q9H0Z9 239 aaKnown RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 SYNPO2LQ9H987 977 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 GPN2Q9H9Y4 310 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 TUBA8Q9NY65 449 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 COMMD3-BMI1R4GMX3 469 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 WDFY3Q8IZQ1 3526 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 A0A087WXM4 84 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 KLK10O43240 276 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 ERI3O43414 337 aaKnown RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 BMP10O95393 424 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 C6orf47O95873 294 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 TBX6O95947 436 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 IGHEP01854 428 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 SEMG1P04279 462 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 IL3P08700 152 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 NUDT7P0C024 238 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 ZNF888P0CJ79 500 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 FBLP22087 321 aaKnown RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 DLSTP36957 453 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 DCTP40126 519 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 HBA1P69905 142 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 DNASE1L3Q13609 305 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 TOR1AIP1Q5JTV8 583 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 BORAQ6PGQ7 559 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 CBLL1Q75N03 491 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 TMEM179BQ7Z7N9 219 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 GALNT10Q86SR1 603 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 HIPK1Q86Z02 1210 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 HS3ST5Q8IZT8 346 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 SNRNP27Q8WVK2 155 aaKnown RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 CIDECQ96AQ7 238 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 TBC1D20Q96BZ9 403 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 HSH2DQ96JZ2 352 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 SORBS1Q9BX66 1292 aaKnown RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 TOR3AQ9H497 397 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 SMURF2Q9HAU4 748 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 LYRM4Q9HD34 91 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 IL1RAPQ9NPH3 570 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 PRDM9Q9NQV7 894 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 FREM2Q5SZK8 3169 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 A0A0A6YYC8 382 aaPredicted RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 ENO4A6NNW6 628 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 I3L1I5 382 aaPredicted RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 PLPP1O14494 284 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 B3GALT2O43825 422 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 GUCY1B2O75343 617 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 FABP3P05413 133 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 ETS2P15036 469 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 TPP2P29144 1249 aaPredicted RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 PCGF2P35227 344 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 ALDH3B2P48448 385 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 CDH15P55291 814 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 CYP4F2P78329 520 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 BIKQ13323 160 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 SSPNQ14714 243 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 MPEG1Q2M385 716 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 DEFB134Q4QY38 66 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 CCNYL2Q5T2Q4 361 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 ARHGAP40Q5TG30 622 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 OR4C11Q6IEV9 310 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 SHQ1Q6PI26 577 aaKnown RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 FAM198BQ6UWH4 519 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 ANGPTL8Q6UXH0 198 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 EIF3MQ7L2H7 374 aaKnown RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 VTCN1Q7Z7D3 282 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 SPACA3Q8IXA5 215 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 OR2Y1Q8NGV0 311 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 ZFP28Q8NHY6 868 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 CT55Q8WUE5 264 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 MUS81Q96NY9 551 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 MBOAT4Q96T53 435 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 SLC35A5Q9BS91 424 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 DDX31Q9H8H2 851 aaKnown RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 MIEF1Q9NQG6 463 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 PRDM7Q9NQW5 492 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 PAPOLBQ9NRJ5 636 aaKnown RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 TCFL5Q9UL49 500 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 FAF1Q9UNN5 650 aaPredicted RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 ABCG2Q9UNQ0 655 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 WBP11Q9Y2W2 641 aaKnown RBP9.55□□□□□ -0.88
VPS53-202ENST00000389040 NAALAD2Q9Y3Q0 740 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 SPACA6W5XKT8 324 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 CEP295Q9C0D2 2601 aa9.55□□□□□ -0.88
VPS53-202ENST00000389040 LOC101059948A0A1B0GTJ6 334 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 C2orf72A6NCS6 295 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 CCDC160A6NGH7 325 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 TRIM64CA6NLI5 447 aa9.54□□□□□ -0.88
VPS53-202ENST00000389040 ZNF891A8MT65 544 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms