RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 PHLDA2Q53GA4 152 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 BMP2KLQ5H9B9 411 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC35D3Q5M8T2 416 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ELFN2Q5R3F8 820 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 TTC22Q5TAA0 569 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF57Q68EA5 555 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 TMEM81Q6P7N7 255 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 Q6Q795 121 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRSS55Q6UWB4 352 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PAQR9Q6ZVX9 377 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ASCL5Q7RTU5 278 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 NPM2Q86SE8 214 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PHLDB2Q86SQ0 1253 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 GATAD2AQ86YP4 633 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ARID3BQ8IVW6 561 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 AFAP1Q8N556 730 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 GVQW1Q8N7I0 195 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR7A2PQ8NGA2 310 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR9Q2Q8NGE9 314 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR13J1Q8NGT2 312 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF461Q8TAF7 563 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 WFDC5Q8TCV5 224 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZUFSPQ96AP4 578 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SH3KBP1Q96B97 665 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 CREB3L1Q96BA8 519 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 RBM18Q96H35 190 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR10C1Q96KK4 312 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 RBM14Q96PK6 669 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ERMAPQ96PL5 475 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 HSD17B14Q9BPX1 270 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 NUSAP1Q9BXS6 441 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PARD6GQ9BYG4 376 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLKQ9H2G2 1235 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 MAGIXQ9H6Y5 334 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 NOX3Q9HBY0 568 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF160Q9HCG1 818 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SAYSD1Q9NPB0 183 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PEMTQ9UBM1 199 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 UBA2Q9UBT2 640 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 FBXL4Q9UKA2 621 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SAMD4AQ9UPU9 718 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ASB3Q9Y575 518 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 MTCH2Q9Y6C9 303 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 NUMA1Q14980 2115 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 KDM5AP29375 1690 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PLXNA1Q9UIW2 1896 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SSC5DA1L4H1 1573 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 MYO9BQ13459 2157 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 SF3B1O75533 1304 aaKnown RBP eCLIP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 IGLV11-55A0A075B6I3 123 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 A0A0J9YW62 118 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CENPVL3A0A0U1RRI6 287 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 IGLON5A6NGN9 336 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 EFCAB7A8K855 629 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 HEPACAM2A8MVW5 462 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 F5H0A9 414 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 PES1O00541 588 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 LDLRAD4O15165 306 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 WDR46O15213 610 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 MBTPS2O43462 519 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 TNFSF12O43508 249 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 AHCYL1O43865 530 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CAND2O75155 1236 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CCNKO75909 580 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 LHBP01229 141 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 IGHV3-23P01764 117 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 TRGV3P03979 118 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 B4GALT1P15291 398 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF708P17019 499 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CASTP20810 708 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CNTFRP26992 372 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 IL12BP29460 328 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 DUTP33316 252 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CDX1P47902 265 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 RORCP51449 518 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC7A2P52569 658 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 UBASH3AP57075 661 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 NUP107P57740 925 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 FLI1Q01543 452 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF763Q0D2J5 394 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 TAF10Q12962 218 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 GAGE2BQ13066 116 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 IL15RAQ13261 267 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 NTRK2Q16620 822 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 KIAA0753Q2KHM9 967 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 C17orf58Q2M2W7 97 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 NADK2Q4G0N4 442 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 GAGE2EQ4V326 116 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF805Q5CZA5 627 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ATAD3BQ5T9A4 648 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 GAGE2AQ6NT46 116 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CCDC149Q6ZUS6 474 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CCDC190Q86UF4 302 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 C17orf82Q86X59 251 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC22A15Q8IZD6 547 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 PYROXD2Q8N2H3 581 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 EXOC3-AS1Q8N2X6 119 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 KDM8Q8N371 416 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM89BQ8N5H3 189 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZBTB44Q8NCP5 570 aa-1.34□□□□□ -2.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms