RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TMCC3Q9ULS5 477 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 H3BN98 237 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 GPX5O75715 221 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 CHRM5P08912 532 aaPredicted RBP12.58□□□□□ -0.4
CCDC3-202ENST00000378839 SOX3P41225 446 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 XKP51811 444 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 SNRPGP62308 76 aaKnown RBP12.58□□□□□ -0.4
CCDC3-202ENST00000378839 HOXC5Q00444 222 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 LINC00299Q6ZSB3 139 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 VRK2Q86Y07 508 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 TCEANCQ8N8B7 351 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 TSACCQ96A04 125 aaPredicted RBP12.58□□□□□ -0.4
CCDC3-202ENST00000378839 GIMAP5Q96F15 307 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 MGLLQ99685 303 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 SARGQ9BW04 601 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 NDEL1Q9GZM8 345 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 WDR70Q9NW82 654 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 CLN6Q9NWW5 311 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 KLF15Q9UIH9 416 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 MGAT4BQ9UQ53 548 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 A0A1W2PRQ8 180 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 SH3D21A4FU49 640 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 WWP2O00308 870 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 SERPINB7O75635 380 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 PDE9AO76083 593 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 RPLP0P05388 317 aaKnown RBP12.58□□□□□ -0.4
CCDC3-202ENST00000378839 CHRNEQ04844 493 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF404Q494X3 552 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 MFSD9Q8NBP5 474 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 WDR36Q8NI36 951 aaKnown RBP12.58□□□□□ -0.4
CCDC3-202ENST00000378839 C10orf90Q96M02 699 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 OR7D2Q96RA2 312 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 GABRG3Q99928 467 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 MTIF3Q9H2K0 278 aaKnown RBP12.58□□□□□ -0.4
CCDC3-202ENST00000378839 HHATLQ9HCP6 504 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 BCL2L10Q9HD36 194 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 CLEC1BQ9P126 229 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 F5P12259 2224 aa12.58□□□□□ -0.4
CCDC3-202ENST00000378839 FCMRO60667 390 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 ASGR2P07307 311 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 TRHRP34981 398 aaPredicted RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 GSTM5P46439 218 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 BTN3A2P78410 334 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 EFNB1P98172 346 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 NIPAL1Q6NVV3 410 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 FBXO42Q6P3S6 717 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 FAM111BQ6SJ93 734 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 RD3Q7Z3Z2 195 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 IQCHQ86VS3 1027 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 RAB42Q8N4Z0 105 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 OR4K5Q8NGD3 323 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 S100ZQ8WXG8 99 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 SLC38A1Q9H2H9 487 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CNOT2Q9NZN8 540 aaKnown RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 EFCAB10A6NFE3 127 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CCDC85CA6NKD9 419 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 P2RX6O15547 441 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 KDM1AO60341 852 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 UGT2B17O75795 530 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 THY1P04216 161 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 HBQ1P09105 142 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 MAGP20916 626 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CD40LGP29965 261 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 AHRP35869 848 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 BUD31P41223 144 aaPredicted RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM201Q5SNT2 666 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 C6orf132Q5T0Z8 1188 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 PAQR7Q86WK9 346 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 PSD4Q8NDX1 1056 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 FAM83FQ8NEG4 500 aaPredicted RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 TTLQ8NG68 377 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 HPS1Q92902 700 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 ELP4Q96EB1 424 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 FAIM2Q9BWQ8 316 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 KLHL25Q9H0H3 589 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 DZANK1Q9NVP4 752 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 MYO9BQ13459 2157 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 LRRTM2O43300 516 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CSO75390 466 aaKnown RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 SLITRK5O94991 958 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF888P0CJ79 500 aaPredicted RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CDH3P22223 829 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 NTSR1P30989 418 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 NTSP30990 170 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 TNFRSF4P43489 277 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 GAS1P54826 345 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF91Q05481 1191 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 CEBPEQ15744 281 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 ENPP7Q6UWV6 458 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM64Q6YI46 380 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF367Q7RTV3 350 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 AMIGO1Q86WK6 493 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 FRMD1Q8N878 549 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 BMFQ96LC9 184 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 C6orf62Q9GZU0 229 aaPredicted RBP12.57□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM168Q9H0V1 697 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 S1PR5Q9H228 398 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 EGLN3Q9H6Z9 239 aa12.57□□□□□ -0.4
CCDC3-202ENST00000378839 KIR3DX1Q9H7L2 352 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms