RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 WARS2Q9UGM6 360 aaKnown RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 KLHL20Q9Y2M5 609 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PMF1-BGLAPU3KQ54 211 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 A0A1W2PPV9 198 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 OR5K3A6NET4 321 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 NTN3O00634 580 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-203ENST00000374116 DUX1O43812 170 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 PRAMEF10O60809 474 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 FKBP9O95302 570 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 TBX6O95947 436 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-203ENST00000374116 TGFB1P01137 390 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 FURINP09958 794 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 IGFBP5P24593 272 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 PKLRP30613 574 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 CAPZBP47756 277 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 RAB28P51157 221 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 GAB1Q13480 694 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 PUM1Q14671 1186 aaKnown RBP eCLIP13.45□□□□□ -0.26
HMGA1-203ENST00000374116 ANKRD34AQ69YU3 496 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 ASCC1Q8N9N2 400 aaKnown RBP13.45□□□□□ -0.26
HMGA1-203ENST00000374116 AVL9Q8NBF6 648 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 C11orf65Q8NCR3 313 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 PPCDCQ96CD2 204 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 YIPF6Q96EC8 236 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 RNF31Q96EP0 1072 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 RHBGQ9H310 441 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 OR51B5Q9H339 312 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 UCK1Q9HA47 277 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 SNX5Q9Y5X3 404 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 A3GALT2U3KPV4 340 aa13.45□□□□□ -0.26
HMGA1-203ENST00000374116 ISM1B1AKI9 464 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 D6RAR5 112 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 KCNK2O95069 426 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 NADKO95544 446 aaPredicted RBP13.44□□□□□ -0.26
HMGA1-203ENST00000374116 CHRM5P08912 532 aaPredicted RBP13.44□□□□□ -0.26
HMGA1-203ENST00000374116 PVRP15151 417 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 SDHBP21912 280 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 EPHA4P54764 986 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 ISL1P61371 349 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 GPLD1P80108 840 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 CD47Q08722 323 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 C2orf80Q0P641 193 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 ZNF385BQ569K4 471 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 PHF19Q5T6S3 580 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 FAM71E1Q6IPT2 247 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 TMIGD1Q6UXZ0 262 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 IKBIPQ70UQ0 350 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 VTCN1Q7Z7D3 282 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 CLIP4Q8N3C7 705 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 ZNF740Q8NDX6 193 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 SETD9Q8NE22 299 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 WDR48Q8TAF3 677 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 SUN5Q8TC36 379 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 ZNF300Q96RE9 604 aaPredicted RBP13.44□□□□□ -0.26
HMGA1-203ENST00000374116 DSN1Q9H410 356 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 PCDHGA1Q9Y5H4 931 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 PTPRBP23467 1997 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 KNTC1P50748 2209 aa13.44□□□□□ -0.26
HMGA1-203ENST00000374116 PMS2P1A4D2B8 440 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 MYO1GB0I1T2 1018 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 hCG_2039718K7EN88 272 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 M0R3G1 203 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 BCKDKO14874 412 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 SUV39H1O43463 412 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 HYAL3O43820 417 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-203ENST00000374116 NUDT7P0C024 238 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 CCDC159P0C7I6 412 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 M6PRP20645 277 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 LSSP48449 732 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 SEPHS1P49903 392 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 ITGA1P56199 1179 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 VLDLRP98155 873 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 MEF2AQ02078 507 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-203ENST00000374116 FOXC1Q12948 553 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 MEP1AQ16819 746 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 CTU2Q2VPK5 515 aaKnown RBP13.43□□□□□ -0.26
HMGA1-203ENST00000374116 ADPRMQ3LIE5 342 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.43□□□□□ -0.261e-7■■□□□ 13.3
HMGA1-203ENST00000374116 KDM4DQ6B0I6 523 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 ADCK1Q86TW2 530 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 OOSP2Q86WS3 158 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 SNX29P2Q8IUI4 249 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 OR4K1Q8NGD4 311 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 FBLIM1Q8WUP2 373 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 NACC2Q96BF6 587 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 MAP3K3Q99759 626 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 SLIRPQ9GZT3 109 aaKnown RBP13.43□□□□□ -0.26
HMGA1-203ENST00000374116 PCBD2Q9H0N5 130 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 REEP1Q9H902 201 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 PELI2Q9HAT8 420 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 ACTR10Q9NZ32 417 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 AHSPQ9NZD4 102 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 HSPE1-MOB4S4R3N1 261 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 CELSR3Q9NYQ7 3312 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 IGHV5-10-1A0A0J9YXX1 117 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 SAP18O00422 153 aaKnown RBP13.43□□□□□ -0.26
HMGA1-203ENST00000374116 MRPS14O60783 128 aaKnown RBP13.43□□□□□ -0.26
HMGA1-203ENST00000374116 DKK1O94907 266 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 CRYZL1O95825 349 aa13.43□□□□□ -0.26
HMGA1-203ENST00000374116 MT-CO3P00414 261 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms