RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 EQTNQ9NQ60 294 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ZCCHC3Q9NUD5 404 aaKnown RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 TMEM45AQ9NWC5 275 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ANKRD10Q9NXR5 420 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 NTMQ9P121 344 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ARMCX1Q9P291 453 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 PRODH2Q9UF12 536 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 TUBD1Q9UJT1 453 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 TNRC6AQ8NDV7 1962 aaKnown RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 PIEZO2Q9H5I5 2752 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 WDPCPO95876 746 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 FAM107AO95990 144 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 GSNP06396 782 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 SOAT1P35610 550 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 CD97P48960 835 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 KLF10Q13118 480 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 NNATQ16517 81 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ZNF468Q5VIY5 522 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 HLA-DQA1Q5Y7H0 255 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 SLC2A7Q6PXP3 512 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 IGFL2Q6UWQ7 119 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 MTDHQ86UE4 582 aaKnown RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 C9orf43Q8TAL5 461 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 GIMAP5Q96F15 307 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 VSTM2LQ96N03 204 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 PANX1Q96RD7 426 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 NXF5Q9H1B4 397 aaKnown RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 SLC6A13Q9NSD5 602 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 CFL2Q9Y281 166 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 FCHO1O14526 889 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 COQ9O75208 318 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 C1QCP02747 245 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 NR0B1P51843 470 aaKnown RBP20.5■□□□□ 0.87
SHMT1-203ENST00000354098 CORO7P57737 925 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 GAB1Q13480 694 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 MAPKAPK3Q16644 382 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 SPDYE7PQ495Y7 208 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 LGI4Q8N135 537 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 GOT1L1Q8NHS2 421 aaPredicted RBP20.5■□□□□ 0.87
SHMT1-203ENST00000354098 RASL10BQ96S79 203 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 CSAG2Q9Y5P2 127 aa20.5■□□□□ 0.87
SHMT1-203ENST00000354098 ZNF155Q12901 538 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-203ENST00000354098 TLR1Q15399 786 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 PIGGQ5H8A4 983 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 TMEM64Q6YI46 380 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 ASB18Q6ZVZ8 466 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 GTF2H4Q92759 462 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 C16orf58Q96GQ5 468 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 EPS8L2Q9H6S3 715 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 RMND5AQ9H871 391 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 GPR55Q9Y2T6 319 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-203ENST00000354098 YARS2Q9Y2Z4 477 aaKnown RBP20.49■□□□□ 0.87
SHMT1-203ENST00000354098 ZNF451Q9Y4E5 1061 aa20.49■□□□□ 0.87
SHMT1-203ENST00000354098 RFXANKO14593 260 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CCDC22O60826 627 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 ERN1O75460 977 aaKnown RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 NADKO95544 446 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 HMGN2P05204 90 aaKnown RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CT45A8P0DMV1 189 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CT45A9P0DMV2 189 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 PPICP45877 212 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 PRR5P85299 388 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 TP53BP2Q13625 1128 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CT45A2Q5DJT8 189 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 PAGE3Q5JUK9 113 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 NPSR1Q6W5P4 371 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 DNAJC14Q6Y2X3 702 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 MSANTD1Q6ZTZ1 278 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 TP53INP1Q96A56 240 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 ITCHQ96J02 903 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 MS4A4EQ96PG1 132 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 YIPF4Q9BSR8 244 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 ARL2BPQ9Y2Y0 163 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CPAMD8Q8IZJ3 1885 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 NUP214P35658 2090 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 A0A1W2PP18 115 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CD96P40200 585 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 PSG6Q00889 435 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 LRRC74AQ0VAA2 488 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 LACTB2Q53H82 288 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 C6orf10Q5SRN2 563 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 IGFL3Q6UXB1 125 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 ZNF621Q6ZSS3 439 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 CATSPER1Q8NEC5 780 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 FBXO30Q8TB52 745 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 SFXN5Q8TD22 340 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 HAS2Q92819 552 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 OTUB1Q96FW1 271 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 LCORQ96JN0 433 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-203ENST00000354098 GPATCH2Q9NW75 528 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 SLAMF8Q9P0V8 285 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 PCDHGB7Q9Y5F8 929 aa20.48■□□□□ 0.87
SHMT1-203ENST00000354098 BOD1L1Q8NFC6 3051 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 RNF103-CHMP3A0A140T963 221 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 OR6B1O95007 311 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 SNRPB2P08579 225 aaKnown RBP20.47■□□□□ 0.87
SHMT1-203ENST00000354098 DRD5P21918 477 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 UQCRC2P22695 453 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 SOX3P41225 446 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms