RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FIP1L1Q6UN15 594 aaKnown RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 MISPQ8IVT2 679 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 FAM156AQ8NDB6 213 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 BAHD1Q8TBE0 780 aaPredicted RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 MRPS26Q9BYN8 205 aaKnown RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 NANOGQ9H9S0 305 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 CD248Q9HCU0 757 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 GALNT8Q9NY28 637 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 RPL36Q9Y3U8 105 aaKnown RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 FAAHO00519 579 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 KIF1CO43896 1103 aaKnown RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 ECDO95905 644 aaPredicted RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 PNMTP11086 282 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 MAMDC2Q7Z304 686 aaPredicted RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 ZNF551Q7Z340 670 aaPredicted RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 ZSWIM9Q86XI8 627 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 PRR22Q8IZ63 422 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 PHTF2Q8N3S3 785 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 SGTBQ96EQ0 304 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 DGCR6LQ9BY27 220 aa9.59□□□□□ -0.87
USP54-201ENST00000339859 KIAA0100Q14667 2235 aaKnown RBP9.59□□□□□ -0.87
USP54-201ENST00000339859 TTKP33981 857 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 UBE2NP61088 152 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 FZD2Q14332 565 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 MYBPC3Q14896 1274 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 AP3S1Q92572 193 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CPNE2Q96FN4 548 aaPredicted RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 ADAD1Q96M93 576 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 MS4A8Q9BY19 250 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 OR52A5Q9H2C5 316 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CAMK2AQ9UQM7 478 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 POMPQ9Y244 141 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 MT-ND1P03886 318 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CIB1Q99828 191 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 KLHL21Q9UJP4 597 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 FAM149AA5PLN7 773 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 PLD2O14939 933 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 OMPP47874 163 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 NDUFAF6Q330K2 333 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CLEC12AQ5QGZ9 265 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 ZNF683Q8IZ20 524 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 LMNTD1Q8N9Z9 388 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 AQP11Q8NBQ7 271 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 KBTBD8Q8NFY9 601 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 RNASE11Q8TAA1 199 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 UBXN10Q96LJ8 280 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 YIPF3Q9GZM5 350 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 ACSS1Q9NUB1 689 aaPredicted RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 KCMF1Q9P0J7 381 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 C5AR2Q9P296 337 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 EIF3KQ9UBQ5 218 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 TRBV5-4A0A0C4DH59 114 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 DAPL1A0PJW8 107 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 PTDSS1P48651 473 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 GFOD2Q3B7J2 385 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CLECL1Q8IZS7 167 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 L3MBTL4Q8NA19 623 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 TEX19Q8NA77 164 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 FAM122AQ96E09 287 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 SLC39A3Q9BRY0 314 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CADM1Q9BY67 442 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 EMC3Q9P0I2 261 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 H0YIG0 161 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 TBX1O43435 398 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 GMPRP36959 345 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 SLC19A1P41440 591 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 GBX2P52951 348 aaPredicted RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 RPS26P62854 115 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 GALK2Q01415 458 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CLPPQ16740 277 aaPredicted RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 NKAIN1Q4KMZ8 207 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 TRIQKQ629K1 86 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 FAM180AQ6UWF9 173 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 UEVLDQ8IX04 471 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 OR1J4Q8NGS1 313 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 ALG14Q96F25 216 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 MSLNLQ96KJ4 702 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 TRNT1Q96Q11 434 aaKnown RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 PIP5K1AQ99755 562 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 RASSF1Q9NS23 344 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 EHD3Q9NZN3 535 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 CRNNQ9UBG3 495 aaPredicted RBP9.58□□□□□ -0.88
USP54-201ENST00000339859 RAB26Q9ULW5 256 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 POLHQ9Y253 713 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 AP4B1Q9Y6B7 739 aa9.58□□□□□ -0.88
USP54-201ENST00000339859 FTCDNL1E5RQL4 147 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 STMND1H3BQB6 276 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 RGS10O43665 173 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 FADS2O95864 444 aaKnown RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 FPR1P21462 350 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 HTR1EP28566 365 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 KIR2DL1P43626 348 aaPredicted RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 PDK3Q15120 406 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 TPRG1LQ5T0D9 272 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 ARL9Q6T311 187 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 TMPPEQ6ZT21 453 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 GHDCQ8N2G8 530 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 THOC3Q96J01 351 aaKnown RBP9.57□□□□□ -0.88
USP54-201ENST00000339859 TRAPPC9Q96Q05 1148 aa9.57□□□□□ -0.88
USP54-201ENST00000339859 WDR77Q9BQA1 342 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms