RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 COQ5Q5HYK3 327 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 LRIF1Q5T3J3 769 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 H3F3CQ6NXT2 135 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 BORAQ6PGQ7 559 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 BHLHB9Q6PI77 547 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 DLEU7Q6UYE1 221 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 C6orf120Q7Z4R8 191 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 SIRT6Q8N6T7 355 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 OR56A1Q8NGH5 318 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 OR5L2Q8NGL0 311 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 VSTM2LQ96N03 204 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 MS4A4EQ96PG1 132 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 NPAS2Q99743 824 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 SLC35A5Q9BS91 424 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 WWTR1Q9GZV5 400 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 LIN28AQ9H9Z2 209 aaKnown RBP20.56■□□□□ 0.88
SDC3-202ENST00000339394 EQTNQ9NQ60 294 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 PTPRQQ9UMZ3 2332 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 KCNH1O95259 989 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 C1QCP02747 245 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 HMGN2P05204 90 aaKnown RBP20.55■□□□□ 0.88
SDC3-202ENST00000339394 RAPSNQ13702 412 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 REP15Q6BDI9 236 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 NUBPLQ8TB37 319 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 GAL3ST4Q96RP7 486 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 ITPAQ9BY32 194 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 FOLH1BQ9HBA9 442 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 GPATCH2Q9NW75 528 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 HOXB9P17482 250 aaPredicted RBP20.55■□□□□ 0.88
SDC3-202ENST00000339394 PRDX6P30041 224 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 LASP1Q14847 261 aaKnown RBP20.55■□□□□ 0.88
SDC3-202ENST00000339394 TBR1Q16650 682 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 IRAK1BP1Q5VVH5 260 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 B3GNTL1Q67FW5 361 aaPredicted RBP20.55■□□□□ 0.88
SDC3-202ENST00000339394 FCRLBQ6BAA4 426 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 TCTN3Q6NUS6 607 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 C16orf47Q6ZP98 133 aaPredicted RBP20.55■□□□□ 0.88
SDC3-202ENST00000339394 TRPM8Q7Z2W7 1104 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 MSRB3Q8IXL7 192 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 SLC5A8Q8N695 610 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 FDCSPQ8NFU4 85 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 DNAJB8Q8NHS0 232 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 ADIPOR1Q96A54 375 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 C16orf58Q96GQ5 468 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 EPS8L2Q9H6S3 715 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 IL1RL2Q9HB29 575 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 SLC25A37Q9NYZ2 338 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 VAPAQ9P0L0 249 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 MYOTQ9UBF9 498 aa20.55■□□□□ 0.88
SDC3-202ENST00000339394 MRASO14807 208 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 CHI3L1P36222 383 aaPredicted RBP20.54■□□□□ 0.88
SDC3-202ENST00000339394 NFYCQ13952 458 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 KRT72Q14CN4 511 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 SAXO2Q658L1 398 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 MFSD12Q6NUT3 480 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 WDR53Q7Z5U6 358 aaPredicted RBP20.54■□□□□ 0.88
SDC3-202ENST00000339394 DHDDSQ86SQ9 333 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 RPS19BP1Q86WX3 136 aaKnown RBP20.54■□□□□ 0.88
SDC3-202ENST00000339394 ZFP90Q8TF47 636 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 EXTL1Q92935 676 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 RCN3Q96D15 328 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 NEURL3Q96EH8 262 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 AURKBQ96GD4 344 aaPredicted RBP20.54■□□□□ 0.88
SDC3-202ENST00000339394 PRORYQ9H606 182 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 ARL8BQ9NVJ2 186 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 GPR83Q9NYM4 423 aa20.54■□□□□ 0.88
SDC3-202ENST00000339394 MAN1A2O60476 641 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 CEACAM4O75871 244 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 ITGB2P05107 769 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 PSG6Q00889 435 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 ZNF155Q12901 538 aaPredicted RBP20.53■□□□□ 0.88
SDC3-202ENST00000339394 ST3GAL2Q16842 350 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 HLA-DQA1Q5Y7H0 255 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 ZCCHC12Q6PEW1 402 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 ARMC10Q8N2F6 343 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 ZNF441Q8N8Z8 693 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 CDRT4Q8N9R6 151 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 PCYOX1LQ8NBM8 494 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 C17orf47Q8NEP4 570 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 YIPF4Q9BSR8 244 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 CDCP1Q9H5V8 836 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 ZNF552Q9H707 407 aaPredicted RBP20.53■□□□□ 0.88
SDC3-202ENST00000339394 TPT1P8Q9HAU6 139 aa20.53■□□□□ 0.88
SDC3-202ENST00000339394 GPR55Q9Y2T6 319 aaPredicted RBP20.53■□□□□ 0.88
SDC3-202ENST00000339394 TRBV5-3A0A0A0MS03 114 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 WWP2O00308 870 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 AIM2O14862 343 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 CT45A8P0DMV1 189 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 CT45A9P0DMV2 189 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 MAP3K8P41279 467 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 PPICP45877 212 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 CASP9P55211 416 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 CORO7P57737 925 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 RPS26P62854 115 aaKnown RBP20.52■□□□□ 0.88
SDC3-202ENST00000339394 TRMT5Q32P41 509 aaKnown RBP20.52■□□□□ 0.88
SDC3-202ENST00000339394 CT45A2Q5DJT8 189 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 ACER2Q5QJU3 275 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 AGAP7PQ5VUJ5 663 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 C19orf48Q6RUI8 117 aa20.52■□□□□ 0.88
SDC3-202ENST00000339394 ANGPTL8Q6UXH0 198 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms