RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RASA2Q15283 850 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TAF11Q15544 211 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GGTA1PQ4G0N0 100 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 HSP90B2PQ58FF3 399 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF470Q6ECI4 717 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MRM1Q6IN84 353 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 LCN10Q6JVE6 187 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 Q6ZSR3 168 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CYP4V2Q6ZWL3 525 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CYS1Q717R9 158 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 HS2ST1Q7LGA3 356 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KDELC2Q7Z4H8 507 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 LCA5Q86VQ0 697 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GPSM1Q86YR5 675 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ARMC8Q8IUR7 673 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 FBXL14Q8N1E6 418 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CIARTQ8N365 385 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GVQW1Q8N7I0 195 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF321PQ8N8H1 164 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CHST14Q8NCH0 376 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 PSMA8Q8TAA3 256 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 PDCD6IPQ8WUM4 868 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CPNE4Q96A23 557 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 AP2M1Q96CW1 435 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF75AQ96N20 296 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ALS2CR12Q96Q35 445 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GSDMAQ96QA5 445 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KRT12Q99456 494 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MAP3K3Q99759 626 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 UGT2B28Q9BY64 529 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 POLR1EQ9GZS1 481 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KCNF1Q9H3M0 494 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 DPEP3Q9H4B8 488 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CARS2Q9HA77 564 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 APOBEC3GQ9HC16 384 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KCNK9Q9NPC2 374 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CISHQ9NSE2 258 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 INTS10Q9NVR2 710 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 RAB20Q9NX57 234 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ATXN10Q9UBB4 475 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 STK38LQ9Y2H1 464 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 PCDHGA11Q9Y5H2 935 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ATP6V1DQ9Y5K8 247 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 DCHS1Q96JQ0 3298 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 LRP1Q07954 4544 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TEX15Q9BXT5 2789 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 AKAP13Q12802 2813 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KLF18A0A0U1RQI7 1052 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 A0A1B0GVL5 298 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FBLL1A6NHQ2 334 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 A6NLC8 198 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 EPM2AB3EWF7 344 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ANKRD28O15084 1053 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SMAD6O43541 496 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 MAFKO60675 156 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 DIAPH2O60879 1101 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SCG5P05408 212 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ITGA5P08648 1049 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ANXA5P08758 320 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 IGFBP1P08833 259 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 HGFP14210 728 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PDGFRAP16234 1089 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 LHCGRP22888 699 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ANOS1P23352 680 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CMA1P23946 247 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CMPK1P30085 196 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PRKCIP41743 596 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KCNJ1P48048 391 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 AP1S2P56377 157 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GABPB1Q06547 395 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CDK5R2Q13319 367 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ERV3-1Q14264 604 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KIR2DS1Q14954 304 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 EFTUD2Q15029 972 aaKnown RBP eCLIP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SLC39A14Q15043 492 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SNCBQ16143 134 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PPP2R5EQ16537 467 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CR1LQ2VPA4 569 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 C9orf66Q5T8R8 295 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 RESP18Q5W5W9 173 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF620Q6ZNG0 422 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 Q6ZS46 218 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 USP51Q70EK9 711 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SYT9Q86SS6 491 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FAM131BQ86XD5 332 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ALDH16A1Q8IZ83 802 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TAGAPQ8N103 731 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OR10A7Q8NGE5 316 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OR5B17Q8NGF7 314 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SCAMP5Q8TAC9 235 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZCCHC10Q8TBK6 192 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TRPC4APQ8TEL6 797 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF721Q8TF20 911 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 POMGNT1Q8WZA1 660 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 DAZLQ92904 295 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 LRRC45Q96CN5 670 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 MSI2Q96DH6 328 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 HES6Q96HZ4 224 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KLHL32Q96NJ5 620 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SNX18Q96RF0 628 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms