RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SELENOPP49908 381 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 PCBP3P57721 371 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 NAE1Q13564 534 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 CLEC12AQ5QGZ9 265 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 MORN1Q5T089 497 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 LYPD4Q6UWN0 246 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 C17orf99Q6UX52 265 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 OR8D4Q8NGM9 314 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 BCL7CQ8WUZ0 217 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 NLNQ9BYT8 704 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 GSX2Q9BZM3 304 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 EMC7Q9NPA0 242 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 ENOPH1Q9UHY7 261 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 PADI3Q9ULW8 664 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 MRPS7Q9Y2R9 242 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 M0QZ92 97 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 STK25O00506 426 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 GPR171O14626 319 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 KHNYNO15037 678 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 GIPRP48546 466 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 GBX2P52951 348 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 BTG1P62324 171 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 OCLNQ16625 522 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 C3orf38Q5JPI3 329 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 FAM92BQ6ZTR7 304 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 FTMTQ8N4E7 242 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 SRFBP1Q8NEF9 429 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 OR2T35Q8NGX2 323 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 WDR48Q8TAF3 677 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 RFT1Q96AA3 541 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 WDR89Q96FK6 387 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 OR4K3Q96R72 315 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 TMEM175Q9BSA9 504 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 HTATIP2Q9BUP3 242 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 AP5M1Q9H0R1 490 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 SRRDQ9UH36 339 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 SPATA2Q9UM82 520 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 CACNG2Q9Y698 323 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 A0A1W2PRG6 482 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 RNASET2O00584 256 aaKnown RBP12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF254O75437 659 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 HPXP02790 462 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 MMP11P24347 488 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 CCND3P30281 292 aaPredicted RBP12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 VIPR1P32241 457 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 OR10A3P58181 314 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 FKBP1BP68106 108 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 MLLT1Q03111 559 aaPredicted RBP12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 HSF2Q03933 536 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 COL9A2Q14055 689 aaPredicted RBP12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 THOC6Q86W42 341 aaKnown RBP12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 SAMD12Q8N8I0 201 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 RAET1EQ8TD07 263 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 OTULINQ96BN8 352 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 NXPE2Q96DL1 559 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 ADAM2Q99965 735 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 DLL4Q9NR61 685 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 SDHAF2Q9NX18 166 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 OR6C2Q9NZP2 312 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 HCN3Q9P1Z3 774 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 KCND3Q9UK17 655 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 FBXW2Q9UKT8 454 aa12.71□□□□□ -0.38
CCDC88C-201ENST00000331194 PRUNE2Q8WUY3 3088 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 HNRNPCL2B2RXH8 293 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 M0R3H8 397 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 SEPT4O43236 478 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 NME6O75414 186 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 TGFB1P01137 390 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 TCRBP04435 133 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 OR1G1P47890 313 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 MEF2AQ02078 507 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 PODNL1Q6PEZ8 512 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ZER1Q7Z7L7 766 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 HS6ST3Q8IZP7 471 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 FAM26EQ8N5C1 309 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ARIH2OSQ8N7S6 290 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ZSWIM3Q96MP5 696 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 REG4Q9BYZ8 158 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 OR51B5Q9H339 312 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 METTL17Q9H7H0 456 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 NDOR1Q9UHB4 597 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 IL20RAQ9UHF4 553 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 TRBV5-4A0A0C4DH59 114 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 TMEM202A6NGA9 273 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 G3V3Q6 166 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 PI15O43692 258 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 SGTAO43765 313 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 SSNA1O43805 119 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 H1F0P07305 194 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 PTNP21246 168 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ZP1P60852 638 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 DUSP4Q13115 394 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF273Q14593 569 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ARHGAP15Q53QZ3 475 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 TRIM40Q6P9F5 258 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 LILRA3Q8N6C8 439 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF527Q8NB42 609 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 PLA2G15Q8NCC3 412 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 OR7G3Q8NG95 312 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC38A5Q8WUX1 472 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms