RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 H2BFMP0C1H6 154 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 RPL23AP62750 156 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 FKBP1BP68106 108 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 HMGCS1Q01581 520 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 FOXRED1Q96CU9 486 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 CDKN2AIPNLQ96HQ2 116 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 FCRL1Q96LA6 429 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 BEX1Q9HBH7 125 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 DUS2Q9NX74 493 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 B4GALT7Q9UBV7 327 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 MRPS17Q9Y2R5 130 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 NALCNQ8IZF0 1738 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 PRKCAP17252 672 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 EML3Q32P44 896 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF678Q5SXM1 525 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 INTS5Q6P9B9 1019 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 SORCS1Q8WY21 1168 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 WASH6PQ9NQA3 447 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 PLCXD1Q9NUJ7 323 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ZFR2Q9UPR6 939 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 SLC27A5Q9Y2P5 690 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 PPP1R2P9O14990 202 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 NIPSNAP2O75323 286 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 CH25HO95992 272 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 CD48P09326 243 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 RNH1P13489 461 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 EDNRBP24530 442 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 CTNNB1P35222 781 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 PBX2P40425 430 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ADCYAP1R1P41586 468 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 POU6F2P78424 691 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 NOXRED1Q6NXP6 359 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 SLC22A14Q9Y267 594 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ADAM12O43184 909 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 RAB40ALP0C0E4 278 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 GGT1P19440 569 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 TPGS2Q68CL5 300 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 DPY19L4Q7Z388 723 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 RAB40AQ8WXH6 277 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 RAB39BQ96DA2 213 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 LRRC46Q96FV0 321 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SCN1AP35498 2009 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 NFYAP23511 347 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 METTL2AQ96IZ6 378 aaKnown RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 PIP5K1CO60331 668 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ITGB5P18084 799 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 GALNT2Q10471 571 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 GPR19Q15760 415 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 EID2Q8N6I1 236 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SEMA6DQ8NFY4 1073 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 OR6C65A6NJZ3 312 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 EGFP01133 1207 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 HEXBP07686 556 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 TAS2R19P59542 299 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 PAPD5Q8NDF8 572 aaKnown RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SLC30A7Q8NEW0 376 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 OR9I1Q8NGQ6 314 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ZFAND1Q8TCF1 268 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 FCRL3Q96P31 734 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 CNTNAP3Q9BZ76 1288 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ADAMTS6Q9UKP5 1117 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 NACAE9PAV3 2078 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 OPRL1P41146 370 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 CAV2P51636 162 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 PAFAH1B3Q15102 231 aaKnown RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 DESI1Q6ICB0 168 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ZFP82Q8N141 532 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 TEX19Q8NA77 164 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 P2RY13Q9BPV8 354 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ZDHHC7Q9NXF8 308 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 HES2Q9Y543 173 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SNHG28P0DPA3 235 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ECI1P42126 302 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 IL13RA1P78552 427 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM125Q96AQ2 219 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 GPR88Q9GZN0 384 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF286AQ9HBT8 521 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SPATA31A5Q5VU36 1347 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SPATA31A7Q8IWB4 1347 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 A0A1B0GUL6 1792 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 IMPA1P29218 277 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ERVK-16P61578 105 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 KIAA0907Q7Z7F0 614 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 OR4K14Q8NGD5 310 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 BRF2Q9HAW0 419 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 DKKL1Q9UK85 242 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SAP18O00422 153 aaKnown RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 OPN1SWP03999 348 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 TIA1P31483 386 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 TLE4Q04727 773 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 P2RX7Q99572 595 aaKnown RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 ACSS2Q9NR19 701 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 SLC22A11Q9NSA0 550 aa13.64□□□□□ -0.23
COL7A1-201ENST00000328333 MAFBQ9Y5Q3 323 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 DNMT3AQ9Y6K1 912 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-201ENST00000328333 NPIPA2E9PIF3 369 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 NPIPA3F8WFD2 350 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 DFFBO76075 338 aa13.63□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM31Q5JXX7 168 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms