RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GON7Q9BXV9 100 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SMOC2Q9H3U7 446 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 C2orf42Q9NWW7 574 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 FZD1Q9UP38 647 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.25□□□□□ -0.29
CSPG4-201ENST00000308508 AKAIN1P0CW23 69 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 BPIP17213 487 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 GALNT2Q10471 571 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 CCINQ13939 588 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SYPL2Q5VXT5 272 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 TPGS2Q68CL5 300 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 OR51A7Q8NH64 312 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 PAQR8Q8TEZ7 354 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 RAB9BQ9NP90 201 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 TEX51A0A1B0GUA7 166 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 EMC8O43402 210 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 FASLGP48023 281 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 CSNK2A1P68400 391 aaPredicted RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 EIF4HQ15056 248 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 BLOC1S3Q6QNY0 202 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 CSNK2A3Q8NEV1 391 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 NDNFQ8TB73 568 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 NTPCRQ9BSD7 190 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ABRACLQ9P1F3 81 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 TP53TG5Q9Y2B4 290 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SPEF2Q9C093 1822 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ACTL6BO94805 426 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 GAAP10253 952 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 MAGEB1P43366 347 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SORCS1Q8WY21 1168 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 CA5BQ9Y2D0 317 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 OR7A17O14581 309 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 STATHP02808 62 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 AGTR2P50052 363 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 DIO3P55073 304 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 PER3P56645 1201 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 UGT3A2Q3SY77 523 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 FBXL22Q6P050 247 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 RPS27LQ71UM5 84 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 RETREG1Q9H6L5 497 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 B3GNT3Q9Y2A9 372 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 MSX1P28360 303 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 TIA1P31483 386 aaKnown RBP eCLIP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 POU4F3Q15319 338 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 AGAP7PQ5VUJ5 663 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 AGAP6Q5VW22 663 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 HACD4Q5VWC8 232 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 DPY19L4Q7Z388 723 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 C7orf43Q8WVR3 580 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 TM9SF4Q92544 642 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 AGAP4Q96P64 663 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ENPP5Q9UJA9 477 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 NFS1Q9Y697 457 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SETD1AO15047 1707 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ATRNL1Q5VV63 1379 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF736B4DX44 427 aaPredicted RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ANKRD28O15084 1053 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 CLN5O75503 358 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 GK3PQ14409 553 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 MEF2DQ14814 521 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SLC22A25Q6T423 547 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 PAPD5Q8NDF8 572 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SGTBQ96EQ0 304 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ZBED3Q96IU2 234 aaPredicted RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 PITX2Q99697 317 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 PRRT1Q99946 306 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 MMP28Q9H239 520 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SLC16A5O15375 505 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 MRPS10P82664 201 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 CCDC116Q8IYX3 515 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ZFP82Q8N141 532 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 FAM109AQ8N4B1 249 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ZDHHC12Q96GR4 267 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ANKRD60Q9BZ19 345 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 GPR88Q9GZN0 384 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 FTCDNL1E5RQL4 147 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 AGPAT2O15120 278 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 F7P08709 466 aaPredicted RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 SNHG28P0DPA3 235 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 BMP2P12643 396 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 WNT4P56705 351 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 RCAN2Q14206 197 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 FAM214AQ32MH5 1076 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 MMAAQ8IVH4 418 aaKnown RBP13.24□□□□□ -0.29
CSPG4-201ENST00000308508 BBS1Q8NFJ9 593 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF681Q96N22 645 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 LUZP4Q9P127 313 aa13.24□□□□□ -0.29
CSPG4-201ENST00000308508 E9PI62 339 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 AK1P00568 194 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 GGT2P36268 569 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 RAB8AP61006 207 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ERVK-16P61578 105 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF585AQ6P3V2 769 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 NAA11Q9BSU3 229 aaPredicted RBP13.23□□□□□ -0.29
CSPG4-201ENST00000308508 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.23□□□□□ -0.29
CSPG4-201ENST00000308508 ARHGEF28Q8N1W1 1705 aaKnown RBP13.23□□□□□ -0.29
CSPG4-201ENST00000308508 KDELR3O43731 214 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 RDH16O75452 317 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 C8AP07357 584 aa13.23□□□□□ -0.29
CSPG4-201ENST00000308508 IRF2P14316 349 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms