RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 C7orf66A4D0T2 115 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 MFSD2BA6NFX1 497 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 MMP20O60882 483 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 KDM4BO94953 1096 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 GAS1P54826 345 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 ARF5P84085 180 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 NUMA1Q14980 2115 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 CCSMST1Q4G0I0 132 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 KIAA1161Q6NSJ0 714 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 NLRC3Q7RTR2 1065 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 PLEKHH3Q7Z736 793 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 SYT9Q86SS6 491 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 IZUMO1Q8IYV9 350 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 THEM5Q8N1Q8 247 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 GTF3C2Q8WUA4 911 aaPredicted RBP12.74□□□□□ -0.37
SKA3-201ENST00000298260 SLC5A11Q8WWX8 675 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 CACNG6Q9BXT2 260 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 SPRTNQ9H040 489 aaPredicted RBP12.74□□□□□ -0.37
SKA3-201ENST00000298260 FKBP7Q9Y680 259 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 BNIP3LO60238 219 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 SIX6O95475 246 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 ACRV1P26436 265 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 GABRA5P31644 462 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 CBX5P45973 191 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 BTG1P62324 171 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 DGCR2P98153 550 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 ETFDHQ16134 617 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 TMEM201Q5SNT2 666 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 RNF219Q5W0B1 726 aaPredicted RBP12.74□□□□□ -0.37
SKA3-201ENST00000298260 SFRP4Q6FHJ7 346 aaPredicted RBP12.74□□□□□ -0.37
SKA3-201ENST00000298260 WASH2PQ6VEQ5 465 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 Q6ZTK2 550 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 PRSS45Q7RTY3 260 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 SIAH3Q8IW03 269 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 DBF4BQ8NFT6 615 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 MOSPD2Q8NHP6 518 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 ASB12Q8WXK4 309 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 MED18Q9BUE0 208 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 TTYH1Q9H313 450 aaPredicted RBP12.74□□□□□ -0.37
SKA3-201ENST00000298260 GKN1Q9NS71 199 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 ZSCAN32Q9NX65 697 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 BAIAP2Q9UQB8 552 aa12.74□□□□□ -0.37
SKA3-201ENST00000298260 H7C0S8 307 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 M0R3H8 397 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 URODP06132 367 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 EPHX1P07099 455 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 IRF1P10914 325 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 CXCL2P19875 107 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ACLYP53396 1101 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 EEF1A2Q05639 463 aaKnown RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 TPBGQ13641 420 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 MSANTD1Q6ZTZ1 278 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 KLBQ86Z14 1044 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 L3MBTL4Q8NA19 623 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ZFPM2Q8WW38 1151 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ELMOD3Q96FG2 381 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 SCRN2Q96FV2 425 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 TBX5Q99593 518 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 SEC22CQ9BRL7 303 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ZNF416Q9BWM5 594 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ADAM30Q9UKF2 790 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ZNF98A6NK75 572 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ADAP00813 363 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 RHOCP08134 193 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ZNF8P17098 575 aaPredicted RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 AHCYP23526 432 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 PTX3P26022 381 aaPredicted RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 SHC1P29353 583 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 PTGER1P34995 402 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 PFN3P60673 137 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 OC90Q02509 493 aaPredicted RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 EIF2B5Q13144 721 aaKnown RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 GNA13Q14344 377 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 OPCMLQ14982 345 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 SLC36A2Q495M3 483 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 TFAP2EQ6VUC0 442 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 FAM9CQ8IZT9 166 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 ZNF707Q96C28 371 aaPredicted RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 NT5DC2Q9H857 520 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 RC3H2Q9HBD1 1191 aaKnown RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 ZFYVE1Q9HBF4 777 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 SGK2Q9HBY8 427 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 DNAJC11Q9NVH1 559 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 CYB5R1Q9UHQ9 305 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 FBXW2Q9UKT8 454 aa12.73□□□□□ -0.37
SKA3-201ENST00000298260 RUVBL1Q9Y265 456 aaKnown RBP12.73□□□□□ -0.37
SKA3-201ENST00000298260 A0A1W2PPK0 400 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 H3BNC9 293 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 NME6O75414 186 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 HIST1H2AGP0C0S8 130 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 JUPP14923 745 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 HIST1H2ADP20671 130 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 MMP11P24347 488 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 ATP5A1P25705 553 aaKnown RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 GIPRP48546 466 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 RPS13P62277 151 aaKnown RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 MEF2AQ02078 507 aaPredicted RBP12.72□□□□□ -0.37
SKA3-201ENST00000298260 DUSP6Q16828 381 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 GSG1Q2KHT4 349 aa12.72□□□□□ -0.37
SKA3-201ENST00000298260 TCTE1Q5JU00 501 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms