RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TBC1D3IA0A087WXS9 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3EA0A087X179 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3KA0A087X1G2 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3FA6NER0 549 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 ELOA3DA6NLF2 546 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3LB9A6J9 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 RTCAO00442 366 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 ERI3O43414 337 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 PAHP00439 452 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3HP0C7X1 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 EN2P19622 333 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 GDI1P31150 447 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 WNT4P56705 351 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TRAM2Q15035 370 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ELOA3BQ3SY89 546 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 CDKL4Q5MAI5 379 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 FAM219BQ5XKK7 198 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3GQ6DHY5 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3CQ6IPX1 549 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3Q8IZP1 549 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 ELOA3Q8NG57 546 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 OR8K3Q8NH51 312 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 RNASE11Q8TAA1 199 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 RHBDF1Q96CC6 855 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 MCHR1Q99705 422 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 GNG8Q9UK08 70 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 URADA6NGE7 173 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 LRRC72A6NJI9 287 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 SLC16A6O15403 523 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 MPIP34949 423 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 SLC7A9P82251 487 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 COL9A2Q14055 689 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 DHCR24Q15392 516 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 LEXMQ3ZCV2 418 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 KHDRBS2Q5VWX1 349 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 LIPJQ5W064 366 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 VASH1Q7L8A9 365 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 LACC1Q8IV20 430 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ACBD7Q8N6N7 88 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 OR8S1Q8NH09 359 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 INIPQ9NRY2 104 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 IL17CQ9P0M4 197 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 PCDHGA12O60330 932 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ALX3O95076 343 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 GSRP00390 522 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ZNF3P17036 446 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 SLC35A2P78381 396 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 FOXRED2Q8IWF2 684 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 RNF175Q8N4F7 328 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 HUS1BQ8NHY5 278 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 CCDC107Q8WV48 283 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 OSTF1Q92882 214 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 PLEKHA6Q9Y2H5 1048 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 TMEM98Q9Y2Y6 226 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 PCDHGB2Q9Y5G2 931 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ARPC5O15511 151 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ZNF30P17039 623 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 BPIP17213 487 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 GCGRP47871 477 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ZNF551Q7Z340 670 aaPredicted RBP14.59□□□□□ -0.07
SHH-201ENST00000297261 RERGQ96A58 199 aaPredicted RBP14.59□□□□□ -0.07
SHH-201ENST00000297261 COMMD4Q9H0A8 199 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ELOVL2Q9NXB9 296 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 EDARQ9UNE0 448 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 SLC25A12O75746 678 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 FAPQ12884 760 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 VEZF1Q14119 521 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 C1QTNF12Q5T7M4 302 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 SERPINA11Q86U17 422 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 CHCHD4Q8N4Q1 142 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 OR51A7Q8NH64 312 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 OR14C36Q8NHC7 312 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 MYLIPQ8WY64 445 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 NXPE2Q96DL1 559 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 ZDHHC4Q9NPG8 344 aa14.59□□□□□ -0.07
SHH-201ENST00000297261 PSMD9O00233 223 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 RCBTB2O95199 551 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 IGLV3-27P01718 113 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 ETV3P41162 512 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 ZNF140P52738 457 aaPredicted RBP14.58□□□□□ -0.07
SHH-201ENST00000297261 ZNF155Q12901 538 aaPredicted RBP14.58□□□□□ -0.07
SHH-201ENST00000297261 GRIN2CQ14957 1233 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 PDZD9Q8IXQ8 264 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 POGLUT1Q8NBL1 392 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 KLK6Q92876 244 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 TMEM19Q96HH6 336 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 BCL2L14Q9BZR8 327 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 B3GNT4Q9C0J1 378 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 C11orf54Q9H0W9 315 aaPredicted RBP14.58□□□□□ -0.07
SHH-201ENST00000297261 OR51J1Q9H342 316 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 CXXC1Q9P0U4 656 aaPredicted RBP14.58□□□□□ -0.07
SHH-201ENST00000297261 PSORS1C1Q9UIG5 152 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 FBXO10Q9UK96 956 aa14.58□□□□□ -0.07
SHH-201ENST00000297261 C13orf42A0A1B0GVH6 325 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 ANHXE9PGG2 379 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 E2F3O00716 465 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 PRH1P02810 166 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 CD2P06729 351 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 DBIP07108 87 aaKnown RBP14.58□□□□□ -0.08
SHH-201ENST00000297261 GNALP38405 381 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms