RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 NMNAT1Q9HAN9 279 aaPredicted RBP12.77□□□□□ -0.37
HPS3-201ENST00000296051 IL17CQ9P0M4 197 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 ZNF69Q9UC07 566 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 L7N2F9 121 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 ACVR1BP36896 505 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 PGFP49763 221 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 DSC1Q08554 894 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 KEAP1Q14145 624 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 NNATQ16517 81 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 HNRNPA1L2Q32P51 320 aaKnown RBP12.77□□□□□ -0.37
HPS3-201ENST00000296051 OTUD1Q5VV17 481 aaPredicted RBP12.77□□□□□ -0.37
HPS3-201ENST00000296051 TRAM1L1Q8N609 369 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 OR5H6Q8NGV6 325 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 NKD1Q969G9 470 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 TM9SF2Q99805 663 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 YARS2Q9Y2Z4 477 aaKnown RBP12.77□□□□□ -0.37
HPS3-201ENST00000296051 PRSS21Q9Y6M0 314 aa12.77□□□□□ -0.37
HPS3-201ENST00000296051 SIPA1L3O60292 1781 aaPredicted RBP12.77□□□□□ -0.37
HPS3-201ENST00000296051 ELOA3DA6NLF2 546 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 CENPBD1B2RD01 187 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 E7EQ34 232 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 I6L893 689 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 RAB36O95755 333 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 CDK1P06493 297 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 CXCR1P25024 350 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 PUDPQ08623 228 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ATXN7L3Q14CW9 347 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 DEFB110Q30KQ9 67 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ELOA3BQ3SY89 546 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 PRPF38BQ5VTL8 546 aaKnown RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 SLC25A25Q6KCM7 469 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ELOA3Q8NG57 546 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 PBX4Q9BYU1 374 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 GPN1Q9HCN4 374 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 MARK1Q9P0L2 795 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 LATS1O95835 1130 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ACRV1P26436 265 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 TGFBR2P37173 567 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 SEMA3BQ13214 749 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 C9orf50Q5SZB4 431 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ANKRD54Q6NXT1 300 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 GRHL3Q8TE85 626 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 NT5C3BQ969T7 300 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 P2RX2Q9UBL9 471 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 CEP250Q9BV73 2442 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 LOC285095A0A1B0GVY8 99 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 RGNQ15493 299 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 UGT3A2Q3SY77 523 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ATCAYQ86WG3 371 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 BEST4Q8NFU0 473 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 CIDECQ96AQ7 238 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 COQ8BQ96D53 544 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 FYTTD1Q96QD9 318 aaKnown RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 COL16A1Q07092 1604 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 GLI3P10071 1580 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 TARM1B6A8C7 271 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 M0R233 179 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 VEGFDO43915 354 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 LILRB3O75022 631 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 GGT2P36268 569 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 RABIFP47224 123 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 MAP4K2Q12851 820 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ENPP2Q13822 863 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 BCDIN3DQ7Z5W3 292 aaKnown RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 PTRH1Q86Y79 214 aaKnown RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 VWA5B2Q8N398 1253 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 GALNT6Q8NCL4 622 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 CCDC32Q9BV29 185 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 ZNF334Q9HCZ1 680 aaPredicted RBP12.76□□□□□ -0.37
HPS3-201ENST00000296051 STUB1Q9UNE7 303 aa12.76□□□□□ -0.37
HPS3-201ENST00000296051 SMLR1H3BR10 107 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 TMEM189-UBE2V1I3L0A0 370 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 SLC16A8O95907 504 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 TIA1P31483 386 aaKnown RBP eCLIP12.75□□□□□ -0.37
HPS3-201ENST00000296051 PBX2P40425 430 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 TNFRSF4P43489 277 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 CSNK1EP49674 416 aaKnown RBP12.75□□□□□ -0.37
HPS3-201ENST00000296051 SNTA1Q13424 505 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 CNIH2Q6PI25 160 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 DENND6BQ8NEG7 585 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 ZNF300Q96RE9 604 aaPredicted RBP12.75□□□□□ -0.37
HPS3-201ENST00000296051 SDHAF3Q9NRP4 125 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 MGAT4AQ9UM21 535 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 MGAT4BQ9UQ53 548 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 LOC100509620A0A075B734 347 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 ANKRD34BA5PLL1 514 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 ZNF726A6NNF4 738 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 GFRA2O00451 464 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 SCDO00767 359 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 FRS3O43559 492 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 SULT1C4O75897 302 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 ADORA3P0DMS8 318 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 CBSLP0DN79 551 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 PRKACBP22694 351 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 CBSP35520 551 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 HK3P52790 923 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 PYCR3Q53H96 274 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 CTSL3PQ5NE16 218 aa12.75□□□□□ -0.37
HPS3-201ENST00000296051 SFRP4Q6FHJ7 346 aaPredicted RBP12.75□□□□□ -0.37
HPS3-201ENST00000296051 DLEU7Q6UYE1 221 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms