RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RALGAPA1Q6GYQ0 2036 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 CNTRLQ7Z7A1 2325 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 FAM86C2PA6NEL3 165 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 PCDH17O14917 1159 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 HSPA13P48723 471 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 PPP2R2BQ00005 443 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 ZNF628Q5EBL2 1059 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 VWA2Q5GFL6 755 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 MFSD12Q6NUT3 480 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 BHLHB9Q6PI77 547 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 FIGNL1Q6PIW4 674 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 TMEM64Q6YI46 380 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 CCDC80Q76M96 950 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 PATL1Q86TB9 770 aaKnown RBP15.42■□□□□ 0.06
USP4-201ENST00000265560 ATG16L2Q8NAA4 619 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 OR4C6Q8NH72 309 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 FGF21Q9NSA1 209 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 GIN1Q9NXP7 522 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 MAT2BQ9NZL9 334 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 TMEFF2Q9UIK5 374 aaPredicted RBP15.42■□□□□ 0.06
USP4-201ENST00000265560 R4GN57 208 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 RNH1P13489 461 aaKnown RBP15.42■□□□□ 0.06
USP4-201ENST00000265560 EPHA4P54764 986 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 KCNAB2Q13303 367 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 NDUFA9Q16795 377 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 SLC36A3Q495N2 470 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 Q6ZPB1 254 aaPredicted RBP15.42■□□□□ 0.06
USP4-201ENST00000265560 ZNF786Q8N393 782 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 ZNF300Q96RE9 604 aaPredicted RBP15.42■□□□□ 0.06
USP4-201ENST00000265560 CNPPD1Q9BV87 410 aa15.42■□□□□ 0.06
USP4-201ENST00000265560 NTN1O95631 604 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 IFNA16P05015 189 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 CD247P20963 164 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 MAN2A2P49641 1150 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 CRISP3P54108 245 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 LSM11P83369 360 aaKnown RBP eCLIP15.41■□□□□ 0.06
USP4-201ENST00000265560 GPR68Q15743 365 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 PRICKLE4Q2TBC4 344 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 TSPYL5Q86VY4 417 aaPredicted RBP15.41■□□□□ 0.06
USP4-201ENST00000265560 PACRGLQ8N7B6 248 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 OR9Q2Q8NGE9 314 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 RBM18Q96H35 190 aaKnown RBP15.41■□□□□ 0.06
USP4-201ENST00000265560 MESP1Q9BRJ9 268 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 ACTRT3Q9BYD9 372 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 ARRDC1-AS1Q9H2J1 176 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 RIBC2Q9H4K1 309 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 DTX4Q9Y2E6 619 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 TNFRSF11BO00300 401 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 FFAR1O14842 300 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 ZNF749O43361 778 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 ACP2P11117 423 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 PIN1Q13526 163 aaPredicted RBP15.41■□□□□ 0.06
USP4-201ENST00000265560 ZNF267Q14586 743 aaPredicted RBP15.41■□□□□ 0.06
USP4-201ENST00000265560 MEX3DQ86XN8 651 aaKnown RBP15.41■□□□□ 0.06
USP4-201ENST00000265560 OR2L13Q8N349 312 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 PROX1Q92786 737 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 TANKQ92844 425 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 MBOAT4Q96T53 435 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 PRTFDC1Q9NRG1 225 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 GPR55Q9Y2T6 319 aaPredicted RBP15.41■□□□□ 0.06
USP4-201ENST00000265560 EPPINO95925 133 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 CAPGP40121 348 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 ITGA1P56199 1179 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 MGAT2Q10469 447 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 GRM7Q14831 915 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 EXOC3L2Q2M3D2 409 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 LAPTM4BQ86VI4 370 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 GPR135Q8IZ08 494 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 OR4N2Q8NGD1 307 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 OR52R1Q8NGF1 315 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 SFXN5Q8TD22 340 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 GPR151Q8TDV0 419 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 SLC38A1Q9H2H9 487 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 PADI2Q9Y2J8 665 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 LYVE1Q9Y5Y7 322 aa15.41■□□□□ 0.06
USP4-201ENST00000265560 GXYLT2A0PJZ3 443 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 A8MVJ9 347 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 NSA2O95478 260 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 IFNA14P01570 189 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 ELK4P28324 431 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 DNAJA1P31689 397 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 GPR3P46089 330 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 NR0B2Q15466 257 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 FAAH2Q6GMR7 532 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 SHQ1Q6PI26 577 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 GEMIN6Q8WXD5 167 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 MS4A4EQ96PG1 132 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 ZNF607Q96SK3 696 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 DPYSL5Q9BPU6 564 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 ANKRD60Q9BZ19 345 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 NECTIN3Q9NQS3 549 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 KIF17Q9P2E2 1029 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 NTNG1Q9Y2I2 539 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 FAM32AQ9Y421 112 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 IFNW1P05000 195 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 IGFBP5P24593 272 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 AVPR1BP47901 424 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 GPLD1P80108 840 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 DAB2P98082 770 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms